Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06655

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
1,278,204	-		LU632_RS06650	0.58	-1.1
1,278,204	-		LU632_RS06650	0.58	-0.4
1,278,695	+				+0.1
1,278,705	+				+0.2
1,278,745	-				+0.1
1,278,749	-				-2.0
1,278,788	-				-0.4
1,278,826	+				+0.1
1,279,041	-		LU632_RS06655	0.27	+0.6
1,279,077	+		LU632_RS06655	0.30	+1.0
1,279,077	+		LU632_RS06655	0.30	-2.7
1,279,078	-		LU632_RS06655	0.30	-0.6
1,279,078	-		LU632_RS06655	0.30	-1.0
1,279,092	-		LU632_RS06655	0.32	+0.7
1,279,143	+		LU632_RS06655	0.37	-0.6
1,279,144	-		LU632_RS06655	0.37	+1.6
1,279,251	-		LU632_RS06655	0.48	-1.8
1,279,253	+		LU632_RS06655	0.48	+0.0
1,279,313	+		LU632_RS06655	0.54	-1.3
1,279,464	+		LU632_RS06655	0.69	+0.8
1,279,555	+		LU632_RS06655	0.78	+0.2
1,279,556	-		LU632_RS06655	0.78	-0.6
1,279,633	+		LU632_RS06655	0.86	+0.5
1,279,634	-		LU632_RS06655	0.86	+0.4
1,279,634	-		LU632_RS06655	0.86	-1.5
1,279,817	+				+2.9
1,279,818	-				+1.1
1,279,851	+				+0.3
1,279,852	-				-1.7
1,279,873	+				-2.2
1,279,873	+				+1.2
1,279,924	-				-2.7
1,279,924	-				-1.9
1,280,236	-		LU632_RS06660	0.23	-1.4