Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt barA and rlmD are separated by 112 nucleotides rlmD and relA are separated by 13 nucleotides
LU632_RS06340: barA - two-component sensor histidine kinase BarA, at 1,215,379 to 1,218,106
barA
LU632_RS06345: rlmD - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 1,218,219 to 1,219,556
rlmD
LU632_RS06350: relA - GTP diphosphokinase, at 1,219,570 to 1,221,798
relA
Position (kb) 1218
1219
1220 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1217.418 kb on - strand, within barA at 1217.422 kb on + strand, within barA at 1217.587 kb on - strand, within barA at 1217.746 kb on + strand, within barA at 1218.107 kb on - strand at 1218.107 kb on - strand at 1218.118 kb on - strand at 1218.171 kb on - strand at 1218.171 kb on - strand at 1218.171 kb on - strand at 1218.196 kb on + strand at 1218.197 kb on - strand at 1218.217 kb on + strand at 1218.584 kb on - strand, within rlmD at 1218.590 kb on + strand, within rlmD at 1218.590 kb on + strand, within rlmD at 1218.590 kb on + strand, within rlmD at 1218.591 kb on - strand, within rlmD at 1218.591 kb on - strand, within rlmD at 1218.642 kb on + strand, within rlmD at 1218.642 kb on + strand, within rlmD at 1218.642 kb on + strand, within rlmD at 1218.716 kb on + strand, within rlmD at 1218.716 kb on + strand, within rlmD at 1218.717 kb on - strand, within rlmD at 1218.746 kb on + strand, within rlmD at 1218.746 kb on + strand, within rlmD at 1218.746 kb on + strand, within rlmD at 1218.754 kb on + strand, within rlmD at 1218.834 kb on - strand, within rlmD at 1218.914 kb on + strand, within rlmD at 1218.955 kb on + strand, within rlmD at 1219.029 kb on - strand, within rlmD at 1219.079 kb on - strand, within rlmD at 1219.089 kb on - strand, within rlmD at 1219.111 kb on + strand, within rlmD at 1219.140 kb on - strand, within rlmD at 1219.194 kb on - strand, within rlmD at 1219.198 kb on + strand, within rlmD at 1219.233 kb on - strand, within rlmD at 1219.242 kb on - strand, within rlmD at 1219.263 kb on - strand, within rlmD at 1219.280 kb on - strand, within rlmD at 1219.364 kb on + strand, within rlmD at 1219.364 kb on + strand, within rlmD at 1219.364 kb on + strand, within rlmD at 1219.365 kb on - strand, within rlmD at 1219.365 kb on - strand, within rlmD at 1219.396 kb on - strand, within rlmD at 1219.407 kb on - strand, within rlmD at 1219.416 kb on - strand, within rlmD at 1219.484 kb on + strand at 1219.485 kb on - strand at 1219.485 kb on - strand at 1219.485 kb on - strand at 1219.523 kb on - strand at 1219.526 kb on + strand at 1219.925 kb on + strand, within relA at 1219.981 kb on - strand, within relA at 1219.981 kb on - strand, within relA at 1220.037 kb on + strand, within relA at 1220.037 kb on + strand, within relA at 1220.038 kb on - strand, within relA at 1220.038 kb on - strand, within relA at 1220.110 kb on - strand, within relA at 1220.110 kb on - strand, within relA at 1220.110 kb on - strand, within relA at 1220.110 kb on - strand, within relA at 1220.114 kb on - strand, within relA at 1220.114 kb on - strand, within relA at 1220.182 kb on + strand, within relA at 1220.200 kb on + strand, within relA at 1220.201 kb on - strand, within relA at 1220.201 kb on - strand, within relA at 1220.203 kb on - strand, within relA at 1220.203 kb on - strand, within relA at 1220.203 kb on - strand, within relA at 1220.251 kb on + strand, within relA at 1220.251 kb on + strand, within relA at 1220.252 kb on - strand, within relA at 1220.252 kb on - strand, within relA at 1220.334 kb on + strand, within relA at 1220.334 kb on + strand, within relA at 1220.334 kb on + strand, within relA at 1220.334 kb on + strand, within relA at 1220.334 kb on + strand, within relA at 1220.334 kb on + strand, within relA at 1220.335 kb on - strand, within relA at 1220.339 kb on - strand, within relA at 1220.339 kb on - strand, within relA at 1220.396 kb on + strand, within relA at 1220.396 kb on + strand, within relA at 1220.396 kb on + strand, within relA at 1220.397 kb on - strand, within relA at 1220.497 kb on + strand, within relA at 1220.497 kb on + strand, within relA at 1220.497 kb on + strand, within relA at 1220.497 kb on + strand, within relA at 1220.498 kb on - strand, within relA at 1220.498 kb on - strand, within relA at 1220.498 kb on - strand, within relA at 1220.498 kb on - strand, within relA at 1220.498 kb on - strand, within relA at 1220.546 kb on + strand, within relA at 1220.556 kb on + strand, within relA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 1,217,418 - barA LU632_RS06340 0.75 -1.7 1,217,422 + barA LU632_RS06340 0.75 +0.6 1,217,587 - barA LU632_RS06340 0.81 +0.6 1,217,746 + barA LU632_RS06340 0.87 -1.0 1,218,107 - -0.1 1,218,107 - +1.8 1,218,118 - +2.0 1,218,171 - +0.8 1,218,171 - -0.1 1,218,171 - +1.1 1,218,196 + -1.0 1,218,197 - +1.0 1,218,217 + -1.4 1,218,584 - rlmD LU632_RS06345 0.27 +1.0 1,218,590 + rlmD LU632_RS06345 0.28 -0.4 1,218,590 + rlmD LU632_RS06345 0.28 -0.4 1,218,590 + rlmD LU632_RS06345 0.28 -1.0 1,218,591 - rlmD LU632_RS06345 0.28 +1.4 1,218,591 - rlmD LU632_RS06345 0.28 -3.1 1,218,642 + rlmD LU632_RS06345 0.32 +0.1 1,218,642 + rlmD LU632_RS06345 0.32 +2.9 1,218,642 + rlmD LU632_RS06345 0.32 +0.6 1,218,716 + rlmD LU632_RS06345 0.37 -0.4 1,218,716 + rlmD LU632_RS06345 0.37 +0.3 1,218,717 - rlmD LU632_RS06345 0.37 +1.4 1,218,746 + rlmD LU632_RS06345 0.39 -1.4 1,218,746 + rlmD LU632_RS06345 0.39 -2.4 1,218,746 + rlmD LU632_RS06345 0.39 +0.7 1,218,754 + rlmD LU632_RS06345 0.40 -1.8 1,218,834 - rlmD LU632_RS06345 0.46 +1.1 1,218,914 + rlmD LU632_RS06345 0.52 +1.6 1,218,955 + rlmD LU632_RS06345 0.55 -2.6 1,219,029 - rlmD LU632_RS06345 0.61 +0.7 1,219,079 - rlmD LU632_RS06345 0.64 -0.8 1,219,089 - rlmD LU632_RS06345 0.65 -3.0 1,219,111 + rlmD LU632_RS06345 0.67 -1.9 1,219,140 - rlmD LU632_RS06345 0.69 +0.3 1,219,194 - rlmD LU632_RS06345 0.73 +0.9 1,219,198 + rlmD LU632_RS06345 0.73 -1.4 1,219,233 - rlmD LU632_RS06345 0.76 +1.1 1,219,242 - rlmD LU632_RS06345 0.76 -0.4 1,219,263 - rlmD LU632_RS06345 0.78 -0.1 1,219,280 - rlmD LU632_RS06345 0.79 -2.2 1,219,364 + rlmD LU632_RS06345 0.86 -0.2 1,219,364 + rlmD LU632_RS06345 0.86 +0.8 1,219,364 + rlmD LU632_RS06345 0.86 -0.4 1,219,365 - rlmD LU632_RS06345 0.86 +1.1 1,219,365 - rlmD LU632_RS06345 0.86 +0.0 1,219,396 - rlmD LU632_RS06345 0.88 -4.0 1,219,407 - rlmD LU632_RS06345 0.89 +0.1 1,219,416 - rlmD LU632_RS06345 0.89 +0.2 1,219,484 + -1.0 1,219,485 - -0.4 1,219,485 - +0.7 1,219,485 - +2.1 1,219,523 - -2.8 1,219,526 + +1.5 1,219,925 + relA LU632_RS06350 0.16 +0.2 1,219,981 - relA LU632_RS06350 0.18 -1.4 1,219,981 - relA LU632_RS06350 0.18 -1.7 1,220,037 + relA LU632_RS06350 0.21 -0.7 1,220,037 + relA LU632_RS06350 0.21 +0.6 1,220,038 - relA LU632_RS06350 0.21 +2.6 1,220,038 - relA LU632_RS06350 0.21 +1.0 1,220,110 - relA LU632_RS06350 0.24 +0.8 1,220,110 - relA LU632_RS06350 0.24 +1.1 1,220,110 - relA LU632_RS06350 0.24 -0.6 1,220,110 - relA LU632_RS06350 0.24 -1.4 1,220,114 - relA LU632_RS06350 0.24 +0.4 1,220,114 - relA LU632_RS06350 0.24 +0.5 1,220,182 + relA LU632_RS06350 0.27 +0.4 1,220,200 + relA LU632_RS06350 0.28 +2.1 1,220,201 - relA LU632_RS06350 0.28 +0.2 1,220,201 - relA LU632_RS06350 0.28 +1.6 1,220,203 - relA LU632_RS06350 0.28 -0.1 1,220,203 - relA LU632_RS06350 0.28 -0.8 1,220,203 - relA LU632_RS06350 0.28 +0.7 1,220,251 + relA LU632_RS06350 0.31 +4.3 1,220,251 + relA LU632_RS06350 0.31 -0.7 1,220,252 - relA LU632_RS06350 0.31 -0.3 1,220,252 - relA LU632_RS06350 0.31 -0.0 1,220,334 + relA LU632_RS06350 0.34 +1.0 1,220,334 + relA LU632_RS06350 0.34 -1.0 1,220,334 + relA LU632_RS06350 0.34 -1.1 1,220,334 + relA LU632_RS06350 0.34 +0.5 1,220,334 + relA LU632_RS06350 0.34 +1.3 1,220,334 + relA LU632_RS06350 0.34 +0.4 1,220,335 - relA LU632_RS06350 0.34 +1.8 1,220,339 - relA LU632_RS06350 0.34 +1.0 1,220,339 - relA LU632_RS06350 0.34 -0.4 1,220,396 + relA LU632_RS06350 0.37 +1.5 1,220,396 + relA LU632_RS06350 0.37 +0.7 1,220,396 + relA LU632_RS06350 0.37 +0.3 1,220,397 - relA LU632_RS06350 0.37 -1.4 1,220,497 + relA LU632_RS06350 0.42 -0.3 1,220,497 + relA LU632_RS06350 0.42 +2.5 1,220,497 + relA LU632_RS06350 0.42 +1.0 1,220,497 + relA LU632_RS06350 0.42 +1.4 1,220,498 - relA LU632_RS06350 0.42 +2.4 1,220,498 - relA LU632_RS06350 0.42 +1.1 1,220,498 - relA LU632_RS06350 0.42 -0.6 1,220,498 - relA LU632_RS06350 0.42 +0.4 1,220,498 - relA LU632_RS06350 0.42 -0.4 1,220,546 + relA LU632_RS06350 0.44 -0.8 1,220,556 + relA LU632_RS06350 0.44 -0.3
Or see this region's nucleotide sequence