Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06060

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
1,152,952	+		LU632_RS06055	0.89	+0.9
1,152,954	+		LU632_RS06055	0.89	+0.2
1,152,954	+		LU632_RS06055	0.89	-2.2
1,152,954	+		LU632_RS06055	0.89	-2.2
1,152,954	+		LU632_RS06055	0.89	+2.0
1,152,955	-		LU632_RS06055	0.89	+0.9
1,152,957	+		LU632_RS06055	0.89	-0.7
1,152,958	-		LU632_RS06055	0.89	+1.0
1,152,958	-		LU632_RS06055	0.89	-1.0
1,152,961	+		LU632_RS06055	0.89	+2.4
1,152,961	+		LU632_RS06055	0.89	-1.4
1,152,961	+		LU632_RS06055	0.89	+0.2
1,152,961	+		LU632_RS06055	0.89	-1.0
1,152,961	+		LU632_RS06055	0.89	-1.0
1,152,962	-		LU632_RS06055	0.89	+0.2
1,152,962	-		LU632_RS06055	0.89	+1.8
1,153,101	+				+0.6
1,153,101	+				+3.6
1,153,101	+				+1.8
1,153,101	+				-3.2
1,153,102	-				-0.4
1,153,102	-				-0.1
1,153,126	+				+2.5
1,153,131	+				-0.1
1,153,279	-				+1.6
1,153,291	+				+0.3
1,153,296	+				-1.7
1,153,296	+				+1.2
1,153,296	+				-0.6
1,153,317	+				-0.4
1,153,474	+				-0.9
1,153,520	+				-0.0
1,153,609	+				+0.8
1,153,609	+				+0.1
1,153,609	+				-1.4
1,153,615	-				+0.4
1,153,657	+				-1.1
1,153,697	-				+1.2
1,153,697	-				-0.9
1,153,775	-				+0.3
1,153,793	+				+0.2
1,153,793	+				-0.1
1,153,793	+				-0.7
1,153,794	-				+1.1
1,153,943	-		LU632_RS06060	0.17	+5.2
1,153,979	-		LU632_RS06060	0.29	-2.0
1,154,058	-		LU632_RS06060	0.54	-1.8
1,154,228	-				-0.9
1,154,305	+				+1.1
1,154,329	+				+1.5
1,154,537	-		LU632_RS06065	0.27	+0.2
1,154,567	+		LU632_RS06065	0.30	-0.3
1,154,567	+		LU632_RS06065	0.30	-0.0
1,154,568	-		LU632_RS06065	0.30	+0.5
1,154,625	+		LU632_RS06065	0.34	+0.8
1,154,625	+		LU632_RS06065	0.34	+0.3
1,154,626	-		LU632_RS06065	0.35	+1.4
1,154,629	+		LU632_RS06065	0.35	+0.8
1,154,630	-		LU632_RS06065	0.35	-2.7
1,154,739	-		LU632_RS06065	0.44	+0.6
1,154,739	-		LU632_RS06065	0.44	+0.0
1,154,957	+		LU632_RS06065	0.62	+0.8
1,154,957	+		LU632_RS06065	0.62	-2.6
1,154,958	-		LU632_RS06065	0.62	+1.6
1,154,960	+		LU632_RS06065	0.63	-1.9
1,154,960	+		LU632_RS06065	0.63	+2.0
1,154,960	+		LU632_RS06065	0.63	-0.4
1,154,960	+		LU632_RS06065	0.63	-4.5
1,154,960	+		LU632_RS06065	0.63	+1.7
1,154,960	+		LU632_RS06065	0.63	+1.6
1,154,961	-		LU632_RS06065	0.63	-0.6
1,154,961	-		LU632_RS06065	0.63	-2.6
1,154,968	+		LU632_RS06065	0.63	+1.4
1,154,969	-		LU632_RS06065	0.63	+1.4
1,155,084	+		LU632_RS06065	0.73	-1.1
1,155,147	+		LU632_RS06065	0.78	-0.8
1,155,147	+		LU632_RS06065	0.78	+0.6
1,155,148	-		LU632_RS06065	0.78	+0.3