Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygfZ and sdhE are separated by 216 nucleotides sdhE and LU632_RS05965 overlap by 20 nucleotides LU632_RS05965 and fldB are separated by 109 nucleotides
LU632_RS05955: ygfZ - tRNA-modifying protein YgfZ, at 1,129,015 to 1,129,995
ygfZ
LU632_RS05960: sdhE - FAD assembly factor SdhE, at 1,130,212 to 1,130,478
sdhE
LU632_RS05965: LU632_RS05965 - hypothetical protein, at 1,130,459 to 1,130,860
_RS05965
LU632_RS05970: fldB - flavodoxin FldB, at 1,130,970 to 1,131,488
fldB
Position (kb) 1130
1131 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1130.091 kb on - strand at 1130.218 kb on - strand at 1130.218 kb on - strand at 1130.219 kb on + strand at 1130.220 kb on - strand at 1130.220 kb on - strand at 1130.223 kb on + strand at 1130.224 kb on - strand at 1130.274 kb on + strand, within sdhE at 1130.280 kb on + strand, within sdhE at 1130.299 kb on + strand, within sdhE at 1130.342 kb on + strand, within sdhE at 1130.376 kb on + strand, within sdhE at 1130.424 kb on + strand, within sdhE at 1130.570 kb on + strand, within LU632_RS05965 at 1130.570 kb on + strand, within LU632_RS05965 at 1130.571 kb on - strand, within LU632_RS05965 at 1130.571 kb on - strand, within LU632_RS05965 at 1130.573 kb on - strand, within LU632_RS05965 at 1130.607 kb on + strand, within LU632_RS05965 at 1130.608 kb on - strand, within LU632_RS05965 at 1130.745 kb on + strand, within LU632_RS05965 at 1130.803 kb on + strand, within LU632_RS05965 at 1130.803 kb on + strand, within LU632_RS05965 at 1130.803 kb on + strand, within LU632_RS05965 at 1130.803 kb on + strand, within LU632_RS05965 at 1130.803 kb on + strand, within LU632_RS05965 at 1130.856 kb on + strand at 1130.856 kb on + strand at 1130.857 kb on - strand at 1130.858 kb on + strand at 1130.863 kb on + strand at 1130.863 kb on + strand at 1130.864 kb on - strand at 1130.897 kb on + strand at 1130.945 kb on + strand at 1130.945 kb on + strand at 1130.952 kb on + strand at 1130.977 kb on - strand at 1131.141 kb on + strand, within fldB at 1131.173 kb on + strand, within fldB at 1131.173 kb on + strand, within fldB at 1131.173 kb on + strand, within fldB at 1131.173 kb on + strand, within fldB at 1131.174 kb on - strand, within fldB at 1131.174 kb on - strand, within fldB at 1131.175 kb on + strand, within fldB at 1131.175 kb on + strand, within fldB at 1131.175 kb on + strand, within fldB at 1131.175 kb on + strand, within fldB at 1131.175 kb on + strand, within fldB at 1131.176 kb on - strand, within fldB at 1131.176 kb on - strand, within fldB at 1131.327 kb on - strand, within fldB at 1131.352 kb on + strand, within fldB at 1131.390 kb on - strand, within fldB at 1131.452 kb on - strand at 1131.452 kb on - strand at 1131.452 kb on - strand at 1131.452 kb on - strand at 1131.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 1,130,091 - +0.6 1,130,218 - -4.2 1,130,218 - +0.6 1,130,219 + -1.4 1,130,220 - -2.4 1,130,220 - -2.0 1,130,223 + -0.1 1,130,224 - -1.9 1,130,274 + sdhE LU632_RS05960 0.23 -4.7 1,130,280 + sdhE LU632_RS05960 0.25 -0.7 1,130,299 + sdhE LU632_RS05960 0.33 +0.6 1,130,342 + sdhE LU632_RS05960 0.49 -4.0 1,130,376 + sdhE LU632_RS05960 0.61 -1.7 1,130,424 + sdhE LU632_RS05960 0.79 -2.0 1,130,570 + LU632_RS05965 0.28 -0.5 1,130,570 + LU632_RS05965 0.28 +2.1 1,130,571 - LU632_RS05965 0.28 +0.6 1,130,571 - LU632_RS05965 0.28 +1.5 1,130,573 - LU632_RS05965 0.28 +1.2 1,130,607 + LU632_RS05965 0.37 -0.1 1,130,608 - LU632_RS05965 0.37 +0.6 1,130,745 + LU632_RS05965 0.71 +1.4 1,130,803 + LU632_RS05965 0.86 -1.0 1,130,803 + LU632_RS05965 0.86 -0.4 1,130,803 + LU632_RS05965 0.86 -2.4 1,130,803 + LU632_RS05965 0.86 -1.0 1,130,803 + LU632_RS05965 0.86 -1.0 1,130,856 + -0.4 1,130,856 + +0.9 1,130,857 - +0.6 1,130,858 + -0.1 1,130,863 + +0.7 1,130,863 + +1.9 1,130,864 - -1.5 1,130,897 + -2.9 1,130,945 + -0.6 1,130,945 + +0.3 1,130,952 + -1.7 1,130,977 - +0.6 1,131,141 + fldB LU632_RS05970 0.33 +0.1 1,131,173 + fldB LU632_RS05970 0.39 -1.7 1,131,173 + fldB LU632_RS05970 0.39 -0.2 1,131,173 + fldB LU632_RS05970 0.39 -0.4 1,131,173 + fldB LU632_RS05970 0.39 +0.2 1,131,174 - fldB LU632_RS05970 0.39 +3.1 1,131,174 - fldB LU632_RS05970 0.39 +0.2 1,131,175 + fldB LU632_RS05970 0.39 -0.1 1,131,175 + fldB LU632_RS05970 0.39 +1.6 1,131,175 + fldB LU632_RS05970 0.39 -2.0 1,131,175 + fldB LU632_RS05970 0.39 +1.0 1,131,175 + fldB LU632_RS05970 0.39 +0.5 1,131,176 - fldB LU632_RS05970 0.40 -1.7 1,131,176 - fldB LU632_RS05970 0.40 +1.6 1,131,327 - fldB LU632_RS05970 0.69 +0.8 1,131,352 + fldB LU632_RS05970 0.74 +0.9 1,131,390 - fldB LU632_RS05970 0.81 +1.6 1,131,452 - +2.5 1,131,452 - +0.9 1,131,452 - -0.2 1,131,452 - +0.9 1,131,452 - -0.1
Or see this region's nucleotide sequence