Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05425

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
1,047,502	+	mutY	LU632_RS05420	0.27	-2.6
1,047,503	-	mutY	LU632_RS05420	0.27	-0.3
1,047,681	+	mutY	LU632_RS05420	0.43	-0.4
1,047,682	-	mutY	LU632_RS05420	0.43	+1.2
1,047,796	+	mutY	LU632_RS05420	0.53	+0.2
1,047,866	-	mutY	LU632_RS05420	0.59	-0.5
1,047,889	+	mutY	LU632_RS05420	0.61	-1.7
1,047,954	-	mutY	LU632_RS05420	0.66	+0.7
1,047,977	-	mutY	LU632_RS05420	0.68	-1.1
1,048,015	-	mutY	LU632_RS05420	0.72	+0.1
1,048,015	-	mutY	LU632_RS05420	0.72	-0.4
1,048,089	+	mutY	LU632_RS05420	0.78	+2.2
1,048,113	+	mutY	LU632_RS05420	0.80	+0.2
1,048,114	-	mutY	LU632_RS05420	0.80	+0.6
1,048,114	-	mutY	LU632_RS05420	0.80	-0.6
1,048,115	+	mutY	LU632_RS05420	0.80	+0.2
1,048,115	+	mutY	LU632_RS05420	0.80	-1.5
1,048,115	+	mutY	LU632_RS05420	0.80	+2.3
1,048,115	+	mutY	LU632_RS05420	0.80	+0.6
1,048,115	+	mutY	LU632_RS05420	0.80	+2.9
1,048,115	+	mutY	LU632_RS05420	0.80	+0.9
1,048,115	+	mutY	LU632_RS05420	0.80	+0.6
1,048,115	+	mutY	LU632_RS05420	0.80	-0.9
1,048,116	-	mutY	LU632_RS05420	0.81	-1.2
1,048,116	-	mutY	LU632_RS05420	0.81	+2.7
1,048,116	-	mutY	LU632_RS05420	0.81	+1.7
1,048,153	+	mutY	LU632_RS05420	0.84	+1.8
1,048,154	-	mutY	LU632_RS05420	0.84	+0.2
1,048,154	-	mutY	LU632_RS05420	0.84	-0.4
1,048,154	-	mutY	LU632_RS05420	0.84	+0.8
1,048,172	-	mutY	LU632_RS05420	0.85	-0.5
1,048,243	+				+0.4
1,048,244	-				+0.8
1,048,244	-				-1.1
1,048,297	-				-2.3
1,048,347	+				+0.6
1,048,403	+				-0.5
1,048,448	+				+1.2
1,048,486	+				+2.0
1,048,868	+	trmB	LU632_RS05425	0.52	+0.2
1,048,874	+	trmB	LU632_RS05425	0.53	-1.4
1,048,874	+	trmB	LU632_RS05425	0.53	+3.4
1,048,875	-	trmB	LU632_RS05425	0.53	+0.4
1,048,875	-	trmB	LU632_RS05425	0.53	+0.2
1,048,967	-	trmB	LU632_RS05425	0.66	+0.2
1,049,051	+	trmB	LU632_RS05425	0.78	-1.4
1,049,051	+	trmB	LU632_RS05425	0.78	-0.5
1,049,051	+	trmB	LU632_RS05425	0.78	-0.4
1,049,052	-	trmB	LU632_RS05425	0.78	-0.5
1,049,052	-	trmB	LU632_RS05425	0.78	-2.0
1,049,052	-	trmB	LU632_RS05425	0.78	-0.4
1,049,052	-	trmB	LU632_RS05425	0.78	-3.1
1,049,052	-	trmB	LU632_RS05425	0.78	-0.4
1,049,073	-	trmB	LU632_RS05425	0.81	-2.4
1,049,109	+	trmB	LU632_RS05425	0.86	-0.2
1,049,109	+	trmB	LU632_RS05425	0.86	-0.8
1,049,110	-	trmB	LU632_RS05425	0.86	-0.4
1,049,110	-	trmB	LU632_RS05425	0.86	+0.6
1,049,110	-	trmB	LU632_RS05425	0.86	-0.4
1,049,110	-	trmB	LU632_RS05425	0.86	-1.5
1,049,113	+	trmB	LU632_RS05425	0.86	-0.7
1,049,535	-				-1.9
1,049,607	+				-3.1
1,049,607	+				-0.6
1,049,630	+				+0.2
1,049,662	+				+0.4
1,049,714	+		LU632_RS05435	0.16	-1.2
1,049,714	+		LU632_RS05435	0.16	+2.8
1,049,715	-		LU632_RS05435	0.16	+0.7
1,049,998	-		LU632_RS05435	0.55	-0.1
1,050,044	+		LU632_RS05435	0.61	-1.7
1,050,045	-		LU632_RS05435	0.62	-2.5
1,050,084	+		LU632_RS05435	0.67	+0.2
1,050,085	-		LU632_RS05435	0.67	-2.2