Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04920 and LU632_RS04925 overlap by 4 nucleotides LU632_RS04925 and LU632_RS04930 are separated by 6 nucleotides LU632_RS04930 and traD are separated by 500 nucleotides
LU632_RS04920: LU632_RS04920 - PilL N-terminal domain-containing protein, at 959,816 to 960,412
_RS04920
LU632_RS04925: LU632_RS04925 - hypothetical protein, at 960,409 to 961,131
_RS04925
LU632_RS04930: LU632_RS04930 - TIGR03759 family integrating conjugative element protein, at 961,138 to 961,842
_RS04930
LU632_RS04935: traD - type IV conjugative transfer system coupling protein TraD, at 962,343 to 963,739
traD
Position (kb) 961
962 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 960.492 kb on + strand, within LU632_RS04925 at 960.492 kb on + strand, within LU632_RS04925 at 960.492 kb on + strand, within LU632_RS04925 at 960.524 kb on + strand, within LU632_RS04925 at 960.525 kb on - strand, within LU632_RS04925 at 960.525 kb on - strand, within LU632_RS04925 at 960.529 kb on + strand, within LU632_RS04925 at 960.529 kb on + strand, within LU632_RS04925 at 960.530 kb on - strand, within LU632_RS04925 at 960.530 kb on - strand, within LU632_RS04925 at 960.591 kb on + strand, within LU632_RS04925 at 960.591 kb on + strand, within LU632_RS04925 at 960.591 kb on + strand, within LU632_RS04925 at 960.594 kb on + strand, within LU632_RS04925 at 961.020 kb on - strand, within LU632_RS04925 at 961.119 kb on + strand at 961.137 kb on + strand at 961.203 kb on + strand at 961.204 kb on - strand at 961.204 kb on - strand at 961.644 kb on + strand, within LU632_RS04930 at 961.645 kb on - strand, within LU632_RS04930 at 961.645 kb on - strand, within LU632_RS04930 at 961.648 kb on + strand, within LU632_RS04930 at 961.648 kb on + strand, within LU632_RS04930 at 961.649 kb on - strand, within LU632_RS04930 at 961.678 kb on - strand, within LU632_RS04930 at 961.683 kb on - strand, within LU632_RS04930 at 961.683 kb on - strand, within LU632_RS04930 at 961.740 kb on + strand, within LU632_RS04930 at 961.741 kb on - strand, within LU632_RS04930 at 961.741 kb on - strand, within LU632_RS04930 at 961.827 kb on + strand at 961.828 kb on - strand at 961.905 kb on + strand at 961.906 kb on - strand at 961.906 kb on - strand at 961.933 kb on + strand at 962.058 kb on - strand at 962.058 kb on - strand at 962.123 kb on + strand at 962.147 kb on + strand at 962.147 kb on + strand at 962.239 kb on + strand at 962.240 kb on - strand at 962.382 kb on + strand at 962.383 kb on - strand at 962.383 kb on - strand at 962.431 kb on + strand at 962.540 kb on - strand, within traD at 962.581 kb on - strand, within traD at 962.598 kb on + strand, within traD at 962.598 kb on + strand, within traD at 962.599 kb on - strand, within traD at 962.622 kb on + strand, within traD at 962.623 kb on - strand, within traD at 962.623 kb on - strand, within traD at 962.750 kb on - strand, within traD at 962.753 kb on + strand, within traD at 962.753 kb on + strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.802 kb on + strand, within traD at 962.803 kb on - strand, within traD at 962.803 kb on - strand, within traD
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 960,492 + LU632_RS04925 0.11 +1.1 960,492 + LU632_RS04925 0.11 -0.7 960,492 + LU632_RS04925 0.11 -0.2 960,524 + LU632_RS04925 0.16 -1.7 960,525 - LU632_RS04925 0.16 +1.2 960,525 - LU632_RS04925 0.16 +0.2 960,529 + LU632_RS04925 0.17 +1.5 960,529 + LU632_RS04925 0.17 +0.0 960,530 - LU632_RS04925 0.17 -1.2 960,530 - LU632_RS04925 0.17 -1.2 960,591 + LU632_RS04925 0.25 -2.0 960,591 + LU632_RS04925 0.25 +0.7 960,591 + LU632_RS04925 0.25 +0.6 960,594 + LU632_RS04925 0.26 -2.2 961,020 - LU632_RS04925 0.85 +2.3 961,119 + -0.1 961,137 + +2.0 961,203 + -0.9 961,204 - +1.1 961,204 - +0.5 961,644 + LU632_RS04930 0.72 -2.4 961,645 - LU632_RS04930 0.72 -2.9 961,645 - LU632_RS04930 0.72 -2.0 961,648 + LU632_RS04930 0.72 -1.0 961,648 + LU632_RS04930 0.72 +0.0 961,649 - LU632_RS04930 0.72 -0.1 961,678 - LU632_RS04930 0.77 -3.0 961,683 - LU632_RS04930 0.77 +2.2 961,683 - LU632_RS04930 0.77 +2.0 961,740 + LU632_RS04930 0.85 +1.6 961,741 - LU632_RS04930 0.86 -0.4 961,741 - LU632_RS04930 0.86 -1.7 961,827 + -0.0 961,828 - -1.7 961,905 + -0.2 961,906 - +0.2 961,906 - +2.0 961,933 + -0.1 962,058 - +0.1 962,058 - +2.2 962,123 + +0.8 962,147 + -0.3 962,147 + +1.0 962,239 + +1.3 962,240 - +0.0 962,382 + -0.4 962,383 - -2.4 962,383 - -0.6 962,431 + -0.1 962,540 - traD LU632_RS04935 0.14 +1.9 962,581 - traD LU632_RS04935 0.17 +0.1 962,598 + traD LU632_RS04935 0.18 -0.7 962,598 + traD LU632_RS04935 0.18 +1.1 962,599 - traD LU632_RS04935 0.18 -0.1 962,622 + traD LU632_RS04935 0.20 +1.4 962,623 - traD LU632_RS04935 0.20 -1.4 962,623 - traD LU632_RS04935 0.20 -1.7 962,750 - traD LU632_RS04935 0.29 +3.9 962,753 + traD LU632_RS04935 0.29 -0.4 962,753 + traD LU632_RS04935 0.29 +0.9 962,754 - traD LU632_RS04935 0.29 +0.6 962,754 - traD LU632_RS04935 0.29 -1.7 962,754 - traD LU632_RS04935 0.29 +0.9 962,754 - traD LU632_RS04935 0.29 +0.6 962,754 - traD LU632_RS04935 0.29 -0.4 962,802 + traD LU632_RS04935 0.33 +0.5 962,803 - traD LU632_RS04935 0.33 +0.2 962,803 - traD LU632_RS04935 0.33 -0.2
Or see this region's nucleotide sequence