Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04880 and LU632_RS04885 are separated by 54 nucleotides LU632_RS04885 and LU632_RS04890 are separated by 650 nucleotides
LU632_RS04880: LU632_RS04880 - DNA topoisomerase III, at 953,713 to 955,435
_RS04880
LU632_RS04885: LU632_RS04885 - topoisomerase DNA-binding C4 zinc finger domain-containing protein, at 955,490 to 955,759
_RS04885
LU632_RS04890: LU632_RS04890 - STY4534 family ICE replication protein, at 956,410 to 956,874
_RS04890
Position (kb) 955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 954.541 kb on - strand, within LU632_RS04880 at 954.644 kb on + strand, within LU632_RS04880 at 954.644 kb on + strand, within LU632_RS04880 at 954.644 kb on + strand, within LU632_RS04880 at 954.645 kb on - strand, within LU632_RS04880 at 954.646 kb on + strand, within LU632_RS04880 at 954.646 kb on + strand, within LU632_RS04880 at 954.646 kb on + strand, within LU632_RS04880 at 954.691 kb on + strand, within LU632_RS04880 at 954.728 kb on + strand, within LU632_RS04880 at 954.844 kb on - strand, within LU632_RS04880 at 954.901 kb on + strand, within LU632_RS04880 at 954.909 kb on + strand, within LU632_RS04880 at 954.922 kb on + strand, within LU632_RS04880 at 954.976 kb on - strand, within LU632_RS04880 at 955.040 kb on + strand, within LU632_RS04880 at 955.041 kb on - strand, within LU632_RS04880 at 955.078 kb on - strand, within LU632_RS04880 at 955.134 kb on + strand, within LU632_RS04880 at 955.134 kb on + strand, within LU632_RS04880 at 955.134 kb on + strand, within LU632_RS04880 at 955.135 kb on - strand, within LU632_RS04880 at 955.135 kb on - strand, within LU632_RS04880 at 955.358 kb on - strand at 955.457 kb on - strand at 955.483 kb on + strand at 955.588 kb on + strand, within LU632_RS04885 at 955.589 kb on - strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.640 kb on - strand, within LU632_RS04885 at 955.657 kb on + strand, within LU632_RS04885 at 955.771 kb on - strand at 955.783 kb on + strand at 955.784 kb on - strand at 955.784 kb on - strand at 955.798 kb on + strand at 955.995 kb on - strand at 956.108 kb on + strand at 956.108 kb on + strand at 956.207 kb on - strand at 956.219 kb on - strand at 956.219 kb on - strand at 956.265 kb on + strand at 956.319 kb on + strand at 956.378 kb on + strand at 956.379 kb on - strand at 956.383 kb on + strand at 956.390 kb on - strand at 956.424 kb on + strand at 956.446 kb on + strand at 956.494 kb on + strand, within LU632_RS04890 at 956.569 kb on + strand, within LU632_RS04890 at 956.569 kb on + strand, within LU632_RS04890 at 956.569 kb on + strand, within LU632_RS04890 at 956.570 kb on - strand, within LU632_RS04890 at 956.706 kb on + strand, within LU632_RS04890 at 956.759 kb on + strand, within LU632_RS04890
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 954,541 - LU632_RS04880 0.48 -2.2 954,644 + LU632_RS04880 0.54 -1.2 954,644 + LU632_RS04880 0.54 -0.2 954,644 + LU632_RS04880 0.54 -1.1 954,645 - LU632_RS04880 0.54 +1.5 954,646 + LU632_RS04880 0.54 +0.4 954,646 + LU632_RS04880 0.54 +0.5 954,646 + LU632_RS04880 0.54 +0.3 954,691 + LU632_RS04880 0.57 -0.2 954,728 + LU632_RS04880 0.59 +0.6 954,844 - LU632_RS04880 0.66 +1.1 954,901 + LU632_RS04880 0.69 -1.0 954,909 + LU632_RS04880 0.69 -0.1 954,922 + LU632_RS04880 0.70 +0.1 954,976 - LU632_RS04880 0.73 +0.6 955,040 + LU632_RS04880 0.77 -0.2 955,041 - LU632_RS04880 0.77 -2.0 955,078 - LU632_RS04880 0.79 +0.6 955,134 + LU632_RS04880 0.82 -1.0 955,134 + LU632_RS04880 0.82 +0.3 955,134 + LU632_RS04880 0.82 -2.0 955,135 - LU632_RS04880 0.83 -0.5 955,135 - LU632_RS04880 0.83 +1.5 955,358 - +0.0 955,457 - -0.9 955,483 + +2.4 955,588 + LU632_RS04885 0.36 -1.4 955,589 - LU632_RS04885 0.37 +0.7 955,639 + LU632_RS04885 0.55 +0.6 955,639 + LU632_RS04885 0.55 +3.1 955,639 + LU632_RS04885 0.55 -0.1 955,639 + LU632_RS04885 0.55 -2.9 955,639 + LU632_RS04885 0.55 -3.3 955,639 + LU632_RS04885 0.55 +1.4 955,640 - LU632_RS04885 0.56 -2.4 955,657 + LU632_RS04885 0.62 +3.2 955,771 - -1.0 955,783 + +3.2 955,784 - +1.1 955,784 - +0.0 955,798 + +0.6 955,995 - -1.4 956,108 + -1.1 956,108 + -2.0 956,207 - +0.9 956,219 - -0.6 956,219 - -1.4 956,265 + +0.9 956,319 + -3.6 956,378 + +2.5 956,379 - -0.0 956,383 + -0.2 956,390 - +1.0 956,424 + +1.0 956,446 + -0.6 956,494 + LU632_RS04890 0.18 -0.4 956,569 + LU632_RS04890 0.34 +0.6 956,569 + LU632_RS04890 0.34 +2.7 956,569 + LU632_RS04890 0.34 -0.1 956,570 - LU632_RS04890 0.34 -1.1 956,706 + LU632_RS04890 0.64 -0.1 956,759 + LU632_RS04890 0.75 +0.3
Or see this region's nucleotide sequence