Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04715 and LU632_RS04720 are separated by 207 nucleotides LU632_RS04720 and LU632_RS04725 overlap by 14 nucleotides
LU632_RS04715: LU632_RS04715 - IS5 family transposase, at 924,710 to 925,477
_RS04715
LU632_RS04720: LU632_RS04720 - response regulator transcription factor, at 925,685 to 926,320
_RS04720
LU632_RS04725: LU632_RS04725 - transporter substrate-binding domain-containing protein, at 926,307 to 929,459
_RS04725
Position (kb) 925
926
927 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 924.689 kb on + strand at 924.708 kb on + strand at 924.728 kb on + strand at 924.752 kb on - strand at 924.854 kb on - strand, within LU632_RS04715 at 924.854 kb on - strand, within LU632_RS04715 at 924.958 kb on + strand, within LU632_RS04715 at 924.959 kb on - strand, within LU632_RS04715 at 924.963 kb on - strand, within LU632_RS04715 at 925.119 kb on + strand, within LU632_RS04715 at 925.119 kb on - strand, within LU632_RS04715 at 925.120 kb on - strand, within LU632_RS04715 at 925.142 kb on - strand, within LU632_RS04715 at 925.338 kb on - strand, within LU632_RS04715 at 925.391 kb on - strand, within LU632_RS04715 at 925.413 kb on - strand at 925.500 kb on - strand at 925.500 kb on - strand at 925.500 kb on - strand at 925.500 kb on - strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.502 kb on + strand at 925.502 kb on - strand at 925.549 kb on - strand at 925.576 kb on + strand at 925.577 kb on - strand at 925.577 kb on - strand at 925.600 kb on + strand at 925.600 kb on + strand at 925.600 kb on + strand at 925.600 kb on + strand at 925.601 kb on - strand at 925.601 kb on - strand at 925.601 kb on - strand at 925.628 kb on + strand at 925.628 kb on + strand at 925.628 kb on + strand at 925.629 kb on - strand at 925.631 kb on - strand at 925.631 kb on - strand at 925.684 kb on + strand at 925.684 kb on + strand at 925.685 kb on - strand at 925.685 kb on - strand at 925.762 kb on + strand, within LU632_RS04720 at 925.774 kb on + strand, within LU632_RS04720 at 925.781 kb on - strand, within LU632_RS04720 at 925.781 kb on - strand, within LU632_RS04720 at 925.886 kb on - strand, within LU632_RS04720 at 925.906 kb on + strand, within LU632_RS04720 at 925.906 kb on + strand, within LU632_RS04720 at 925.942 kb on - strand, within LU632_RS04720 at 925.943 kb on + strand, within LU632_RS04720 at 925.982 kb on - strand, within LU632_RS04720 at 926.032 kb on + strand, within LU632_RS04720 at 926.032 kb on + strand, within LU632_RS04720 at 926.212 kb on + strand, within LU632_RS04720 at 926.213 kb on - strand, within LU632_RS04720 at 926.228 kb on + strand, within LU632_RS04720 at 926.228 kb on + strand, within LU632_RS04720 at 926.228 kb on + strand, within LU632_RS04720 at 926.229 kb on - strand, within LU632_RS04720 at 926.229 kb on - strand, within LU632_RS04720 at 926.230 kb on + strand, within LU632_RS04720 at 926.278 kb on + strand at 926.336 kb on - strand at 926.381 kb on + strand at 926.610 kb on + strand at 926.681 kb on + strand, within LU632_RS04725 at 926.696 kb on - strand, within LU632_RS04725 at 926.710 kb on - strand, within LU632_RS04725 at 926.793 kb on + strand, within LU632_RS04725 at 926.956 kb on + strand, within LU632_RS04725 at 926.956 kb on + strand, within LU632_RS04725 at 926.963 kb on - strand, within LU632_RS04725 at 926.963 kb on - strand, within LU632_RS04725 at 927.082 kb on + strand, within LU632_RS04725 at 927.088 kb on + strand, within LU632_RS04725 at 927.161 kb on + strand, within LU632_RS04725 at 927.187 kb on + strand, within LU632_RS04725 at 927.299 kb on + strand, within LU632_RS04725
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 924,689 + +1.8 924,708 + +0.1 924,728 + -0.2 924,752 - +1.7 924,854 - LU632_RS04715 0.19 +0.8 924,854 - LU632_RS04715 0.19 +0.5 924,958 + LU632_RS04715 0.32 +2.6 924,959 - LU632_RS04715 0.32 +0.7 924,963 - LU632_RS04715 0.33 +0.6 925,119 + LU632_RS04715 0.53 -0.1 925,119 - LU632_RS04715 0.53 +1.3 925,120 - LU632_RS04715 0.53 -0.6 925,142 - LU632_RS04715 0.56 -1.0 925,338 - LU632_RS04715 0.82 +1.6 925,391 - LU632_RS04715 0.89 +0.4 925,413 - -2.4 925,500 - +2.2 925,500 - +0.5 925,500 - -0.7 925,500 - -1.4 925,501 + -0.6 925,501 + -1.2 925,501 + -1.2 925,501 + +2.6 925,501 + -0.2 925,502 + -0.1 925,502 - -2.2 925,549 - -0.4 925,576 + +0.4 925,577 - +0.9 925,577 - -2.0 925,600 + -0.7 925,600 + +0.6 925,600 + -1.4 925,600 + -0.5 925,601 - -2.7 925,601 - +0.7 925,601 - +0.2 925,628 + -1.7 925,628 + +0.2 925,628 + -1.9 925,629 - +2.9 925,631 - +1.7 925,631 - -0.3 925,684 + -2.0 925,684 + +1.9 925,685 - +4.2 925,685 - -3.9 925,762 + LU632_RS04720 0.12 +0.8 925,774 + LU632_RS04720 0.14 +1.7 925,781 - LU632_RS04720 0.15 -1.4 925,781 - LU632_RS04720 0.15 -1.0 925,886 - LU632_RS04720 0.32 +0.5 925,906 + LU632_RS04720 0.35 +3.3 925,906 + LU632_RS04720 0.35 -0.0 925,942 - LU632_RS04720 0.40 -2.7 925,943 + LU632_RS04720 0.41 +1.0 925,982 - LU632_RS04720 0.47 -0.5 926,032 + LU632_RS04720 0.55 -0.3 926,032 + LU632_RS04720 0.55 +1.2 926,212 + LU632_RS04720 0.83 -2.3 926,213 - LU632_RS04720 0.83 +1.4 926,228 + LU632_RS04720 0.85 +0.7 926,228 + LU632_RS04720 0.85 -1.0 926,228 + LU632_RS04720 0.85 -1.7 926,229 - LU632_RS04720 0.86 +0.9 926,229 - LU632_RS04720 0.86 -0.0 926,230 + LU632_RS04720 0.86 +0.4 926,278 + +1.9 926,336 - -0.3 926,381 + +0.7 926,610 + +0.4 926,681 + LU632_RS04725 0.12 -1.7 926,696 - LU632_RS04725 0.12 -0.4 926,710 - LU632_RS04725 0.13 +0.6 926,793 + LU632_RS04725 0.15 -1.0 926,956 + LU632_RS04725 0.21 +0.6 926,956 + LU632_RS04725 0.21 -0.5 926,963 - LU632_RS04725 0.21 -2.0 926,963 - LU632_RS04725 0.21 +0.2 927,082 + LU632_RS04725 0.25 -1.2 927,088 + LU632_RS04725 0.25 -1.0 927,161 + LU632_RS04725 0.27 +5.8 927,187 + LU632_RS04725 0.28 +0.6 927,299 + LU632_RS04725 0.31 -3.0
Or see this region's nucleotide sequence