Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04590 and LU632_RS04595 are separated by 190 nucleotides LU632_RS04595 and LU632_RS04600 overlap by 16 nucleotides LU632_RS04600 and LU632_RS04605 are separated by 160 nucleotides
LU632_RS04590: LU632_RS04590 - IS481 family transposase, at 898,393 to 899,406
_RS04590
LU632_RS04595: LU632_RS04595 - hypothetical protein, at 899,597 to 899,749
_RS04595
LU632_RS04600: LU632_RS04600 - hypothetical protein, at 899,734 to 900,135
_RS04600
LU632_RS04605: LU632_RS04605 - hypothetical protein, at 900,296 to 901,408
_RS04605
Position (kb) 899
900
901 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 899.511 kb on + strand at 899.567 kb on + strand at 899.623 kb on - strand, within LU632_RS04595 at 899.642 kb on + strand, within LU632_RS04595 at 899.684 kb on - strand, within LU632_RS04595 at 899.708 kb on + strand, within LU632_RS04595 at 899.709 kb on - strand, within LU632_RS04595 at 899.709 kb on - strand, within LU632_RS04595 at 899.709 kb on - strand, within LU632_RS04595 at 899.709 kb on - strand, within LU632_RS04595 at 899.709 kb on - strand, within LU632_RS04595 at 899.768 kb on + strand at 899.769 kb on - strand at 899.769 kb on - strand at 899.842 kb on - strand, within LU632_RS04600 at 900.140 kb on + strand at 900.140 kb on + strand at 900.143 kb on - strand at 900.196 kb on + strand at 900.196 kb on + strand at 900.197 kb on - strand at 900.197 kb on - strand at 900.200 kb on + strand at 900.200 kb on + strand at 900.201 kb on - strand at 900.201 kb on - strand at 900.557 kb on - strand, within LU632_RS04605 at 900.711 kb on - strand, within LU632_RS04605 at 901.009 kb on + strand, within LU632_RS04605 at 901.053 kb on - strand, within LU632_RS04605 at 901.090 kb on + strand, within LU632_RS04605
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 899,511 + -0.3 899,567 + -0.4 899,623 - LU632_RS04595 0.17 +0.6 899,642 + LU632_RS04595 0.29 -2.2 899,684 - LU632_RS04595 0.57 -3.4 899,708 + LU632_RS04595 0.73 -1.4 899,709 - LU632_RS04595 0.73 +1.7 899,709 - LU632_RS04595 0.73 -0.1 899,709 - LU632_RS04595 0.73 +0.1 899,709 - LU632_RS04595 0.73 +0.7 899,709 - LU632_RS04595 0.73 -2.2 899,768 + -1.8 899,769 - -0.8 899,769 - -1.0 899,842 - LU632_RS04600 0.27 -3.5 900,140 + +1.0 900,140 + +0.4 900,143 - -2.2 900,196 + -2.4 900,196 + -0.1 900,197 - -1.0 900,197 - -0.5 900,200 + +1.2 900,200 + +0.6 900,201 - +0.2 900,201 - -3.5 900,557 - LU632_RS04605 0.23 -3.5 900,711 - LU632_RS04605 0.37 -0.8 901,009 + LU632_RS04605 0.64 -3.2 901,053 - LU632_RS04605 0.68 +0.3 901,090 + LU632_RS04605 0.71 +1.1
Or see this region's nucleotide sequence