Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04340 and LU632_RS04345 are separated by 47 nucleotides LU632_RS04345 and LU632_RS04350 are separated by 243 nucleotides LU632_RS04350 and LU632_RS04355 are separated by 446 nucleotides LU632_RS04355 and LU632_RS04360 overlap by 11 nucleotides
LU632_RS04340: LU632_RS04340 - universal stress protein, at 861,168 to 861,269
_RS04340
LU632_RS04345: LU632_RS04345 - hypothetical protein, at 861,317 to 861,745
_RS04345
LU632_RS04350: LU632_RS04350 - hypothetical protein, at 861,989 to 862,129
_RS04350
LU632_RS04355: LU632_RS04355 - IS6 family transposase, at 862,576 to 862,905
_RS04355
LU632_RS04360: LU632_RS04360 - VRR-NUC domain-containing protein, at 862,895 to 863,426
_RS04360
Position (kb) 861
862
863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 861.018 kb on - strand at 861.043 kb on - strand at 861.122 kb on - strand at 861.378 kb on - strand, within LU632_RS04345 at 861.382 kb on - strand, within LU632_RS04345 at 861.543 kb on + strand, within LU632_RS04345 at 861.586 kb on + strand, within LU632_RS04345 at 861.599 kb on + strand, within LU632_RS04345 at 861.601 kb on + strand, within LU632_RS04345 at 861.602 kb on - strand, within LU632_RS04345 at 861.602 kb on - strand, within LU632_RS04345 at 861.611 kb on - strand, within LU632_RS04345 at 861.645 kb on + strand, within LU632_RS04345 at 861.645 kb on + strand, within LU632_RS04345 at 861.690 kb on - strand, within LU632_RS04345 at 861.716 kb on + strand at 861.717 kb on - strand at 861.718 kb on + strand at 861.719 kb on - strand at 861.719 kb on - strand at 861.719 kb on - strand at 861.719 kb on - strand at 861.729 kb on + strand at 861.732 kb on + strand at 861.786 kb on - strand at 861.840 kb on + strand at 861.959 kb on + strand at 861.989 kb on - strand at 862.023 kb on + strand, within LU632_RS04350 at 862.023 kb on + strand, within LU632_RS04350 at 862.024 kb on - strand, within LU632_RS04350 at 862.492 kb on + strand at 862.492 kb on + strand at 862.546 kb on + strand at 862.627 kb on - strand, within LU632_RS04355 at 862.628 kb on + strand, within LU632_RS04355 at 862.628 kb on + strand, within LU632_RS04355 at 862.628 kb on + strand, within LU632_RS04355 at 862.629 kb on - strand, within LU632_RS04355 at 862.641 kb on + strand, within LU632_RS04355 at 862.641 kb on + strand, within LU632_RS04355 at 862.641 kb on + strand, within LU632_RS04355 at 862.657 kb on + strand, within LU632_RS04355 at 862.748 kb on + strand, within LU632_RS04355 at 862.816 kb on + strand, within LU632_RS04355 at 862.843 kb on + strand, within LU632_RS04355 at 862.843 kb on + strand, within LU632_RS04355 at 862.844 kb on - strand, within LU632_RS04355 at 863.060 kb on + strand, within LU632_RS04360 at 863.077 kb on + strand, within LU632_RS04360 at 863.098 kb on + strand, within LU632_RS04360 at 863.098 kb on + strand, within LU632_RS04360
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 861,018 - +1.6 861,043 - -0.5 861,122 - -0.7 861,378 - LU632_RS04345 0.14 +1.8 861,382 - LU632_RS04345 0.15 -0.1 861,543 + LU632_RS04345 0.53 -3.1 861,586 + LU632_RS04345 0.63 -2.5 861,599 + LU632_RS04345 0.66 +1.8 861,601 + LU632_RS04345 0.66 +4.3 861,602 - LU632_RS04345 0.66 +2.0 861,602 - LU632_RS04345 0.66 -1.4 861,611 - LU632_RS04345 0.69 +0.6 861,645 + LU632_RS04345 0.76 +0.5 861,645 + LU632_RS04345 0.76 -1.4 861,690 - LU632_RS04345 0.87 +0.1 861,716 + +1.0 861,717 - +0.6 861,718 + +1.0 861,719 - -0.2 861,719 - +1.6 861,719 - -2.0 861,719 - +1.3 861,729 + +1.0 861,732 + +0.7 861,786 - -0.7 861,840 + -1.0 861,959 + -0.3 861,989 - -2.2 862,023 + LU632_RS04350 0.24 +1.2 862,023 + LU632_RS04350 0.24 -0.2 862,024 - LU632_RS04350 0.25 +2.0 862,492 + +0.6 862,492 + +0.5 862,546 + -1.4 862,627 - LU632_RS04355 0.15 +0.0 862,628 + LU632_RS04355 0.16 +2.2 862,628 + LU632_RS04355 0.16 -1.4 862,628 + LU632_RS04355 0.16 -2.7 862,629 - LU632_RS04355 0.16 -2.7 862,641 + LU632_RS04355 0.20 -0.1 862,641 + LU632_RS04355 0.20 -0.9 862,641 + LU632_RS04355 0.20 +0.8 862,657 + LU632_RS04355 0.25 -0.4 862,748 + LU632_RS04355 0.52 +2.3 862,816 + LU632_RS04355 0.73 +1.1 862,843 + LU632_RS04355 0.81 -1.3 862,843 + LU632_RS04355 0.81 -1.9 862,844 - LU632_RS04355 0.81 -2.0 863,060 + LU632_RS04360 0.31 -0.0 863,077 + LU632_RS04360 0.34 -1.8 863,098 + LU632_RS04360 0.38 -0.4 863,098 + LU632_RS04360 0.38 -1.8
Or see this region's nucleotide sequence