Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ulaD and LU632_RS04275 are separated by 2 nucleotides LU632_RS04275 and araD overlap by 4 nucleotides araD and LU632_RS04285 are separated by 89 nucleotides
LU632_RS04270: ulaD - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 849,678 to 850,340
ulaD
LU632_RS04275: LU632_RS04275 - L-ribulose-5-phosphate 3-epimerase, at 850,343 to 851,200
_RS04275
LU632_RS04280: araD - L-ribulose-5-phosphate 4-epimerase, at 851,197 to 851,895
araD
LU632_RS04285: LU632_RS04285 - IS5 family transposase, at 851,985 to 852,801
_RS04285
Position (kb) 851
852 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 850.235 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.268 kb on + strand, within ulaD at 850.325 kb on + strand at 850.337 kb on - strand at 850.338 kb on + strand at 850.338 kb on + strand at 850.338 kb on + strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.365 kb on + strand at 850.365 kb on + strand at 850.366 kb on - strand at 850.366 kb on - strand at 850.368 kb on - strand at 850.368 kb on - strand at 850.368 kb on - strand at 850.455 kb on + strand, within LU632_RS04275 at 850.548 kb on + strand, within LU632_RS04275 at 850.592 kb on - strand, within LU632_RS04275 at 850.622 kb on + strand, within LU632_RS04275 at 850.701 kb on - strand, within LU632_RS04275 at 850.701 kb on - strand, within LU632_RS04275 at 850.703 kb on + strand, within LU632_RS04275 at 850.819 kb on + strand, within LU632_RS04275 at 850.834 kb on + strand, within LU632_RS04275 at 850.834 kb on + strand, within LU632_RS04275 at 850.881 kb on + strand, within LU632_RS04275 at 850.882 kb on - strand, within LU632_RS04275 at 850.882 kb on - strand, within LU632_RS04275 at 851.256 kb on + strand at 851.256 kb on + strand at 851.257 kb on - strand at 851.257 kb on - strand at 851.341 kb on + strand, within araD at 851.364 kb on + strand, within araD at 851.364 kb on + strand, within araD at 851.365 kb on - strand, within araD at 851.365 kb on - strand, within araD at 851.399 kb on + strand, within araD at 851.485 kb on - strand, within araD at 851.485 kb on - strand, within araD at 851.621 kb on - strand, within araD at 851.626 kb on + strand, within araD at 851.627 kb on - strand, within araD at 851.627 kb on - strand, within araD at 851.647 kb on - strand, within araD at 851.648 kb on + strand, within araD at 851.649 kb on - strand, within araD at 851.649 kb on - strand, within araD at 851.670 kb on + strand, within araD at 851.730 kb on + strand, within araD at 851.762 kb on + strand, within araD at 851.763 kb on - strand, within araD at 851.782 kb on + strand, within araD at 851.782 kb on + strand, within araD at 851.782 kb on + strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.855 kb on - strand at 851.882 kb on - strand at 851.896 kb on + strand at 851.899 kb on + strand at 852.832 kb on + strand at 852.832 kb on + strand at 852.832 kb on + strand at 852.832 kb on + strand at 852.832 kb on + strand at 852.832 kb on + strand at 852.834 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 850,235 - ulaD LU632_RS04270 0.84 -1.9 850,241 - ulaD LU632_RS04270 0.85 -2.9 850,241 - ulaD LU632_RS04270 0.85 -1.1 850,241 - ulaD LU632_RS04270 0.85 -1.7 850,268 + ulaD LU632_RS04270 0.89 -1.5 850,325 + -1.4 850,337 - -2.0 850,338 + -1.4 850,338 + -2.4 850,338 + -1.2 850,339 - -2.2 850,339 - -3.1 850,339 - -1.4 850,339 - -2.1 850,365 + -2.2 850,365 + +1.9 850,366 - +0.7 850,366 - -4.2 850,368 - -1.5 850,368 - -1.0 850,368 - -1.7 850,455 + LU632_RS04275 0.13 -1.7 850,548 + LU632_RS04275 0.24 +1.2 850,592 - LU632_RS04275 0.29 -1.4 850,622 + LU632_RS04275 0.33 -0.9 850,701 - LU632_RS04275 0.42 -1.4 850,701 - LU632_RS04275 0.42 -4.6 850,703 + LU632_RS04275 0.42 +1.5 850,819 + LU632_RS04275 0.55 +0.8 850,834 + LU632_RS04275 0.57 -0.4 850,834 + LU632_RS04275 0.57 -2.0 850,881 + LU632_RS04275 0.63 -1.4 850,882 - LU632_RS04275 0.63 -1.4 850,882 - LU632_RS04275 0.63 -0.3 851,256 + -1.2 851,256 + -1.2 851,257 - +0.7 851,257 - -0.3 851,341 + araD LU632_RS04280 0.21 -2.6 851,364 + araD LU632_RS04280 0.24 -2.1 851,364 + araD LU632_RS04280 0.24 +0.6 851,365 - araD LU632_RS04280 0.24 -1.3 851,365 - araD LU632_RS04280 0.24 -0.7 851,399 + araD LU632_RS04280 0.29 -0.4 851,485 - araD LU632_RS04280 0.41 -3.0 851,485 - araD LU632_RS04280 0.41 -1.4 851,621 - araD LU632_RS04280 0.61 -1.2 851,626 + araD LU632_RS04280 0.61 -2.7 851,627 - araD LU632_RS04280 0.62 -1.4 851,627 - araD LU632_RS04280 0.62 -0.8 851,647 - araD LU632_RS04280 0.64 -2.1 851,648 + araD LU632_RS04280 0.65 -0.4 851,649 - araD LU632_RS04280 0.65 -1.4 851,649 - araD LU632_RS04280 0.65 -2.9 851,670 + araD LU632_RS04280 0.68 -1.0 851,730 + araD LU632_RS04280 0.76 -3.6 851,762 + araD LU632_RS04280 0.81 -1.7 851,763 - araD LU632_RS04280 0.81 -1.9 851,782 + araD LU632_RS04280 0.84 -0.7 851,782 + araD LU632_RS04280 0.84 -2.4 851,782 + araD LU632_RS04280 0.84 +1.0 851,783 - araD LU632_RS04280 0.84 -1.7 851,783 - araD LU632_RS04280 0.84 -3.1 851,783 - araD LU632_RS04280 0.84 -1.0 851,783 - araD LU632_RS04280 0.84 -2.0 851,783 - araD LU632_RS04280 0.84 -1.7 851,855 - -2.7 851,882 - -0.8 851,896 + -1.0 851,899 + -2.0 852,832 + +0.0 852,832 + +0.6 852,832 + +1.1 852,832 + -0.8 852,832 + +1.7 852,832 + -1.3 852,834 + +0.6
Or see this region's nucleotide sequence