Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03315 and LU632_RS03320 are separated by 181 nucleotides LU632_RS03320 and LU632_RS03325 overlap by 4 nucleotides LU632_RS03325 and LU632_RS03330 are separated by 3 nucleotides
LU632_RS03315: LU632_RS03315 - MbeD family mobilization/exclusion protein, at 680,543 to 680,757
_RS03315
LU632_RS03320: LU632_RS03320 - hypothetical protein, at 680,939 to 681,630
_RS03320
LU632_RS03325: LU632_RS03325 - hypothetical protein, at 681,627 to 682,049
_RS03325
LU632_RS03330: LU632_RS03330 - LacI family DNA-binding transcriptional regulator, at 682,053 to 683,060
_RS03330
Position (kb) 681
682
683 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 680.668 kb on + strand, within LU632_RS03315 at 680.845 kb on - strand at 680.845 kb on - strand at 680.845 kb on - strand at 680.845 kb on - strand at 680.944 kb on + strand at 681.012 kb on + strand, within LU632_RS03320 at 681.108 kb on - strand, within LU632_RS03320 at 681.108 kb on - strand, within LU632_RS03320 at 681.119 kb on + strand, within LU632_RS03320 at 681.283 kb on + strand, within LU632_RS03320 at 681.283 kb on + strand, within LU632_RS03320 at 681.333 kb on - strand, within LU632_RS03320 at 681.333 kb on - strand, within LU632_RS03320 at 681.380 kb on - strand, within LU632_RS03320 at 681.428 kb on - strand, within LU632_RS03320 at 681.520 kb on - strand, within LU632_RS03320 at 681.594 kb on - strand at 681.594 kb on - strand at 681.615 kb on + strand at 681.615 kb on + strand at 681.616 kb on - strand at 681.658 kb on + strand at 681.659 kb on - strand at 681.659 kb on - strand at 681.659 kb on - strand at 681.675 kb on - strand, within LU632_RS03325 at 681.699 kb on + strand, within LU632_RS03325 at 681.700 kb on - strand, within LU632_RS03325 at 681.701 kb on + strand, within LU632_RS03325 at 681.701 kb on + strand, within LU632_RS03325 at 681.701 kb on + strand, within LU632_RS03325 at 681.702 kb on - strand, within LU632_RS03325 at 681.702 kb on - strand, within LU632_RS03325 at 681.702 kb on - strand, within LU632_RS03325 at 681.732 kb on + strand, within LU632_RS03325 at 681.732 kb on + strand, within LU632_RS03325 at 681.734 kb on + strand, within LU632_RS03325 at 681.734 kb on + strand, within LU632_RS03325 at 681.735 kb on - strand, within LU632_RS03325 at 681.735 kb on - strand, within LU632_RS03325 at 681.756 kb on + strand, within LU632_RS03325 at 681.757 kb on - strand, within LU632_RS03325 at 681.762 kb on + strand, within LU632_RS03325 at 681.763 kb on - strand, within LU632_RS03325 at 681.763 kb on - strand, within LU632_RS03325 at 681.763 kb on - strand, within LU632_RS03325 at 681.763 kb on - strand, within LU632_RS03325 at 681.778 kb on + strand, within LU632_RS03325 at 681.778 kb on + strand, within LU632_RS03325 at 681.779 kb on - strand, within LU632_RS03325 at 681.782 kb on - strand, within LU632_RS03325 at 681.782 kb on - strand, within LU632_RS03325 at 681.806 kb on + strand, within LU632_RS03325 at 681.806 kb on + strand, within LU632_RS03325 at 681.807 kb on - strand, within LU632_RS03325 at 681.807 kb on - strand, within LU632_RS03325 at 681.807 kb on - strand, within LU632_RS03325 at 681.893 kb on - strand, within LU632_RS03325 at 681.893 kb on - strand, within LU632_RS03325 at 681.893 kb on - strand, within LU632_RS03325 at 681.972 kb on - strand, within LU632_RS03325 at 681.977 kb on + strand, within LU632_RS03325 at 681.978 kb on - strand, within LU632_RS03325 at 681.986 kb on + strand, within LU632_RS03325 at 681.999 kb on + strand, within LU632_RS03325 at 681.999 kb on + strand, within LU632_RS03325 at 682.000 kb on - strand, within LU632_RS03325 at 682.005 kb on - strand, within LU632_RS03325 at 682.034 kb on - strand at 682.034 kb on - strand at 682.036 kb on - strand at 682.130 kb on - strand at 682.133 kb on + strand at 682.134 kb on - strand at 682.234 kb on + strand, within LU632_RS03330 at 682.290 kb on + strand, within LU632_RS03330 at 682.437 kb on - strand, within LU632_RS03330 at 682.454 kb on + strand, within LU632_RS03330 at 682.467 kb on + strand, within LU632_RS03330 at 682.501 kb on + strand, within LU632_RS03330 at 682.501 kb on + strand, within LU632_RS03330 at 682.502 kb on - strand, within LU632_RS03330 at 682.512 kb on + strand, within LU632_RS03330 at 682.514 kb on + strand, within LU632_RS03330 at 682.515 kb on - strand, within LU632_RS03330 at 682.524 kb on - strand, within LU632_RS03330 at 682.729 kb on - strand, within LU632_RS03330 at 682.729 kb on - strand, within LU632_RS03330 at 682.839 kb on + strand, within LU632_RS03330 at 682.840 kb on - strand, within LU632_RS03330 at 682.840 kb on - strand, within LU632_RS03330 at 682.840 kb on - strand, within LU632_RS03330 at 682.841 kb on + strand, within LU632_RS03330 at 682.842 kb on - strand, within LU632_RS03330 at 682.842 kb on - strand, within LU632_RS03330 at 682.899 kb on + strand, within LU632_RS03330 at 682.899 kb on + strand, within LU632_RS03330 at 682.900 kb on - strand, within LU632_RS03330 at 682.900 kb on - strand, within LU632_RS03330 at 682.900 kb on - strand, within LU632_RS03330 at 682.900 kb on - strand, within LU632_RS03330 at 682.900 kb on - strand, within LU632_RS03330 at 682.905 kb on + strand, within LU632_RS03330 at 682.906 kb on - strand, within LU632_RS03330 at 682.925 kb on + strand, within LU632_RS03330 at 683.029 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 680,668 + LU632_RS03315 0.58 +0.7 680,845 - +0.6 680,845 - +0.5 680,845 - -2.3 680,845 - -1.0 680,944 + -0.8 681,012 + LU632_RS03320 0.11 +1.0 681,108 - LU632_RS03320 0.24 +2.3 681,108 - LU632_RS03320 0.24 -0.9 681,119 + LU632_RS03320 0.26 -1.3 681,283 + LU632_RS03320 0.50 -2.9 681,283 + LU632_RS03320 0.50 +0.7 681,333 - LU632_RS03320 0.57 +0.6 681,333 - LU632_RS03320 0.57 -0.3 681,380 - LU632_RS03320 0.64 +0.4 681,428 - LU632_RS03320 0.71 -0.7 681,520 - LU632_RS03320 0.84 +1.2 681,594 - -3.0 681,594 - +1.0 681,615 + -1.9 681,615 + -0.1 681,616 - -0.5 681,658 + +0.6 681,659 - +0.8 681,659 - +3.7 681,659 - -3.8 681,675 - LU632_RS03325 0.11 -2.3 681,699 + LU632_RS03325 0.17 -2.3 681,700 - LU632_RS03325 0.17 +1.3 681,701 + LU632_RS03325 0.17 -0.3 681,701 + LU632_RS03325 0.17 +0.0 681,701 + LU632_RS03325 0.17 -0.1 681,702 - LU632_RS03325 0.18 +0.8 681,702 - LU632_RS03325 0.18 +0.3 681,702 - LU632_RS03325 0.18 -1.2 681,732 + LU632_RS03325 0.25 -0.2 681,732 + LU632_RS03325 0.25 +1.1 681,734 + LU632_RS03325 0.25 +1.7 681,734 + LU632_RS03325 0.25 -0.7 681,735 - LU632_RS03325 0.26 +4.1 681,735 - LU632_RS03325 0.26 +3.0 681,756 + LU632_RS03325 0.30 -1.3 681,757 - LU632_RS03325 0.31 +2.6 681,762 + LU632_RS03325 0.32 +1.8 681,763 - LU632_RS03325 0.32 +0.4 681,763 - LU632_RS03325 0.32 +2.2 681,763 - LU632_RS03325 0.32 +3.2 681,763 - LU632_RS03325 0.32 +2.4 681,778 + LU632_RS03325 0.36 -0.2 681,778 + LU632_RS03325 0.36 +1.7 681,779 - LU632_RS03325 0.36 +1.8 681,782 - LU632_RS03325 0.37 +2.3 681,782 - LU632_RS03325 0.37 +2.0 681,806 + LU632_RS03325 0.42 +2.7 681,806 + LU632_RS03325 0.42 -0.1 681,807 - LU632_RS03325 0.43 +1.4 681,807 - LU632_RS03325 0.43 +1.1 681,807 - LU632_RS03325 0.43 +1.2 681,893 - LU632_RS03325 0.63 +1.5 681,893 - LU632_RS03325 0.63 +0.8 681,893 - LU632_RS03325 0.63 +4.2 681,972 - LU632_RS03325 0.82 +2.6 681,977 + LU632_RS03325 0.83 +0.2 681,978 - LU632_RS03325 0.83 +2.2 681,986 + LU632_RS03325 0.85 -0.7 681,999 + LU632_RS03325 0.88 +0.7 681,999 + LU632_RS03325 0.88 +0.4 682,000 - LU632_RS03325 0.88 +3.1 682,005 - LU632_RS03325 0.89 +3.3 682,034 - +2.9 682,034 - +1.7 682,036 - +2.2 682,130 - +1.1 682,133 + +2.8 682,134 - +0.7 682,234 + LU632_RS03330 0.18 -2.3 682,290 + LU632_RS03330 0.24 -0.3 682,437 - LU632_RS03330 0.38 +2.0 682,454 + LU632_RS03330 0.40 +1.6 682,467 + LU632_RS03330 0.41 +1.8 682,501 + LU632_RS03330 0.44 +3.4 682,501 + LU632_RS03330 0.44 +2.6 682,502 - LU632_RS03330 0.45 +0.2 682,512 + LU632_RS03330 0.46 +2.6 682,514 + LU632_RS03330 0.46 +2.4 682,515 - LU632_RS03330 0.46 +2.9 682,524 - LU632_RS03330 0.47 +2.7 682,729 - LU632_RS03330 0.67 +4.1 682,729 - LU632_RS03330 0.67 +2.1 682,839 + LU632_RS03330 0.78 +4.0 682,840 - LU632_RS03330 0.78 +1.8 682,840 - LU632_RS03330 0.78 +3.2 682,840 - LU632_RS03330 0.78 +1.5 682,841 + LU632_RS03330 0.78 -0.3 682,842 - LU632_RS03330 0.78 +1.1 682,842 - LU632_RS03330 0.78 +2.0 682,899 + LU632_RS03330 0.84 +2.8 682,899 + LU632_RS03330 0.84 +2.0 682,900 - LU632_RS03330 0.84 +1.8 682,900 - LU632_RS03330 0.84 +2.1 682,900 - LU632_RS03330 0.84 +2.6 682,900 - LU632_RS03330 0.84 +2.1 682,900 - LU632_RS03330 0.84 -1.3 682,905 + LU632_RS03330 0.85 +0.1 682,906 - LU632_RS03330 0.85 +3.3 682,925 + LU632_RS03330 0.87 -0.0 683,029 + -0.8
Or see this region's nucleotide sequence