Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03265 and LU632_RS03270 are separated by 156 nucleotides LU632_RS03270 and LU632_RS03275 are separated by 47 nucleotides LU632_RS03275 and LU632_RS03280 are separated by 202 nucleotides LU632_RS03280 and LU632_RS03285 are separated by 55 nucleotides LU632_RS03285 and LU632_RS03290 are separated by 135 nucleotides
LU632_RS03265: LU632_RS03265 - avirulence protein, at 664,701 to 665,930
_RS03265
LU632_RS03270: LU632_RS03270 - hypothetical protein, at 666,087 to 666,284
_RS03270
LU632_RS03275: LU632_RS03275 - hypothetical protein, at 666,332 to 666,490
_RS03275
LU632_RS03280: LU632_RS03280 - AvrE-family type 3 secretion system effector, at 666,693 to 672,020
_RS03280
LU632_RS03285: LU632_RS03285 - type III secretion system chaperone, at 672,076 to 672,495
_RS03285
LU632_RS03290: LU632_RS03290 - diguanylate cyclase, at 672,631 to 674,544
_RS03290
Position (kb) 666
667
668
669
670
671
672
673 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 665.706 kb on - strand, within LU632_RS03265 at 665.848 kb on - strand at 665.935 kb on - strand at 665.946 kb on - strand at 666.114 kb on - strand, within LU632_RS03270 at 666.322 kb on + strand at 666.327 kb on + strand at 666.542 kb on - strand at 666.620 kb on + strand at 666.657 kb on + strand at 666.658 kb on - strand at 666.671 kb on + strand at 666.730 kb on + strand at 666.731 kb on - strand at 666.797 kb on + strand at 666.798 kb on - strand at 666.798 kb on - strand at 666.857 kb on + strand at 667.031 kb on - strand at 667.140 kb on - strand at 667.374 kb on - strand, within LU632_RS03280 at 667.491 kb on + strand, within LU632_RS03280 at 667.492 kb on - strand, within LU632_RS03280 at 667.751 kb on + strand, within LU632_RS03280 at 667.751 kb on + strand, within LU632_RS03280 at 667.890 kb on - strand, within LU632_RS03280 at 668.107 kb on - strand, within LU632_RS03280 at 668.170 kb on + strand, within LU632_RS03280 at 668.171 kb on - strand, within LU632_RS03280 at 668.190 kb on - strand, within LU632_RS03280 at 668.222 kb on + strand, within LU632_RS03280 at 668.222 kb on + strand, within LU632_RS03280 at 668.222 kb on + strand, within LU632_RS03280 at 668.223 kb on - strand, within LU632_RS03280 at 668.223 kb on - strand, within LU632_RS03280 at 668.232 kb on - strand, within LU632_RS03280 at 668.266 kb on + strand, within LU632_RS03280 at 668.307 kb on + strand, within LU632_RS03280 at 668.307 kb on + strand, within LU632_RS03280 at 668.486 kb on + strand, within LU632_RS03280 at 668.486 kb on + strand, within LU632_RS03280 at 668.487 kb on - strand, within LU632_RS03280 at 668.487 kb on - strand, within LU632_RS03280 at 668.487 kb on - strand, within LU632_RS03280 at 668.487 kb on - strand, within LU632_RS03280 at 668.490 kb on - strand, within LU632_RS03280 at 668.543 kb on + strand, within LU632_RS03280 at 668.544 kb on - strand, within LU632_RS03280 at 668.544 kb on - strand, within LU632_RS03280 at 668.609 kb on + strand, within LU632_RS03280 at 668.610 kb on + strand, within LU632_RS03280 at 668.645 kb on + strand, within LU632_RS03280 at 668.646 kb on - strand, within LU632_RS03280 at 668.682 kb on - strand, within LU632_RS03280 at 668.718 kb on - strand, within LU632_RS03280 at 668.747 kb on + strand, within LU632_RS03280 at 668.770 kb on + strand, within LU632_RS03280 at 668.829 kb on + strand, within LU632_RS03280 at 668.865 kb on + strand, within LU632_RS03280 at 668.906 kb on - strand, within LU632_RS03280 at 668.906 kb on - strand, within LU632_RS03280 at 668.906 kb on - strand, within LU632_RS03280 at 669.140 kb on + strand, within LU632_RS03280 at 669.140 kb on + strand, within LU632_RS03280 at 669.141 kb on - strand, within LU632_RS03280 at 669.180 kb on + strand, within LU632_RS03280 at 669.247 kb on + strand, within LU632_RS03280 at 669.378 kb on + strand, within LU632_RS03280 at 669.443 kb on + strand, within LU632_RS03280 at 669.444 kb on - strand, within LU632_RS03280 at 669.475 kb on + strand, within LU632_RS03280 at 669.476 kb on - strand, within LU632_RS03280 at 669.476 kb on - strand, within LU632_RS03280 at 669.476 kb on - strand, within LU632_RS03280 at 669.478 kb on - strand, within LU632_RS03280 at 669.608 kb on + strand, within LU632_RS03280 at 669.609 kb on - strand, within LU632_RS03280 at 669.808 kb on + strand, within LU632_RS03280 at 669.809 kb on - strand, within LU632_RS03280 at 669.809 kb on - strand, within LU632_RS03280 at 669.809 kb on - strand, within LU632_RS03280 at 669.881 kb on + strand, within LU632_RS03280 at 669.881 kb on + strand, within LU632_RS03280 at 669.929 kb on + strand, within LU632_RS03280 at 669.930 kb on - strand, within LU632_RS03280 at 669.977 kb on - strand, within LU632_RS03280 at 670.119 kb on + strand, within LU632_RS03280 at 670.119 kb on + strand, within LU632_RS03280 at 670.120 kb on - strand, within LU632_RS03280 at 670.121 kb on + strand, within LU632_RS03280 at 670.122 kb on - strand, within LU632_RS03280 at 670.122 kb on - strand, within LU632_RS03280 at 670.184 kb on + strand, within LU632_RS03280 at 670.333 kb on - strand, within LU632_RS03280 at 670.370 kb on + strand, within LU632_RS03280 at 670.425 kb on + strand, within LU632_RS03280 at 670.426 kb on - strand, within LU632_RS03280 at 670.426 kb on - strand, within LU632_RS03280 at 670.466 kb on + strand, within LU632_RS03280 at 670.518 kb on + strand, within LU632_RS03280 at 670.526 kb on - strand, within LU632_RS03280 at 670.526 kb on - strand, within LU632_RS03280 at 670.533 kb on + strand, within LU632_RS03280 at 670.533 kb on + strand, within LU632_RS03280 at 670.534 kb on - strand, within LU632_RS03280 at 670.534 kb on - strand, within LU632_RS03280 at 670.534 kb on - strand, within LU632_RS03280 at 670.535 kb on + strand, within LU632_RS03280 at 670.535 kb on + strand, within LU632_RS03280 at 670.536 kb on - strand, within LU632_RS03280 at 670.536 kb on - strand, within LU632_RS03280 at 670.536 kb on - strand, within LU632_RS03280 at 670.536 kb on - strand, within LU632_RS03280 at 670.536 kb on - strand, within LU632_RS03280 at 670.536 kb on - strand, within LU632_RS03280 at 670.536 kb on - strand, within LU632_RS03280 at 670.536 kb on - strand, within LU632_RS03280 at 670.791 kb on + strand, within LU632_RS03280 at 670.791 kb on + strand, within LU632_RS03280 at 670.792 kb on - strand, within LU632_RS03280 at 670.908 kb on - strand, within LU632_RS03280 at 670.980 kb on - strand, within LU632_RS03280 at 671.099 kb on + strand, within LU632_RS03280 at 671.100 kb on - strand, within LU632_RS03280 at 671.126 kb on + strand, within LU632_RS03280 at 671.477 kb on + strand, within LU632_RS03280 at 671.477 kb on + strand, within LU632_RS03280 at 671.481 kb on + strand, within LU632_RS03280 at 671.481 kb on + strand, within LU632_RS03280 at 671.482 kb on - strand, within LU632_RS03280 at 671.482 kb on - strand, within LU632_RS03280 at 671.482 kb on - strand, within LU632_RS03280 at 671.482 kb on - strand, within LU632_RS03280 at 671.487 kb on - strand, within LU632_RS03280 at 671.513 kb on + strand at 671.528 kb on - strand at 671.614 kb on + strand at 671.615 kb on - strand at 671.647 kb on - strand at 671.819 kb on + strand at 671.899 kb on - strand at 671.899 kb on - strand at 672.187 kb on - strand, within LU632_RS03285 at 672.356 kb on - strand, within LU632_RS03285 at 672.463 kb on - strand at 672.507 kb on + strand at 672.508 kb on - strand at 672.747 kb on + strand at 672.749 kb on + strand at 672.772 kb on - strand at 672.885 kb on + strand, within LU632_RS03290
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 665,706 - LU632_RS03265 0.82 -0.4 665,848 - +0.1 665,935 - +1.1 665,946 - +0.4 666,114 - LU632_RS03270 0.14 -0.5 666,322 + -0.2 666,327 + -3.2 666,542 - +0.0 666,620 + +1.6 666,657 + -1.3 666,658 - +2.2 666,671 + +2.0 666,730 + -0.5 666,731 - +1.7 666,797 + -1.0 666,798 - -0.7 666,798 - +1.9 666,857 + +4.3 667,031 - +0.1 667,140 - -2.3 667,374 - LU632_RS03280 0.13 -2.1 667,491 + LU632_RS03280 0.15 +0.7 667,492 - LU632_RS03280 0.15 -0.3 667,751 + LU632_RS03280 0.20 +0.1 667,751 + LU632_RS03280 0.20 +0.5 667,890 - LU632_RS03280 0.22 -0.9 668,107 - LU632_RS03280 0.27 -0.4 668,170 + LU632_RS03280 0.28 +1.4 668,171 - LU632_RS03280 0.28 -0.8 668,190 - LU632_RS03280 0.28 -2.3 668,222 + LU632_RS03280 0.29 +0.1 668,222 + LU632_RS03280 0.29 -2.0 668,222 + LU632_RS03280 0.29 +0.9 668,223 - LU632_RS03280 0.29 -0.2 668,223 - LU632_RS03280 0.29 +0.0 668,232 - LU632_RS03280 0.29 -2.8 668,266 + LU632_RS03280 0.30 -0.8 668,307 + LU632_RS03280 0.30 -0.6 668,307 + LU632_RS03280 0.30 -0.8 668,486 + LU632_RS03280 0.34 -1.6 668,486 + LU632_RS03280 0.34 +0.2 668,487 - LU632_RS03280 0.34 +1.5 668,487 - LU632_RS03280 0.34 +0.2 668,487 - LU632_RS03280 0.34 +0.5 668,487 - LU632_RS03280 0.34 -0.6 668,490 - LU632_RS03280 0.34 +0.0 668,543 + LU632_RS03280 0.35 -1.0 668,544 - LU632_RS03280 0.35 -0.9 668,544 - LU632_RS03280 0.35 -2.3 668,609 + LU632_RS03280 0.36 -0.3 668,610 + LU632_RS03280 0.36 +0.5 668,645 + LU632_RS03280 0.37 +0.7 668,646 - LU632_RS03280 0.37 +0.8 668,682 - LU632_RS03280 0.37 -1.9 668,718 - LU632_RS03280 0.38 +1.7 668,747 + LU632_RS03280 0.39 -0.3 668,770 + LU632_RS03280 0.39 +0.0 668,829 + LU632_RS03280 0.40 -0.4 668,865 + LU632_RS03280 0.41 +0.7 668,906 - LU632_RS03280 0.42 +0.7 668,906 - LU632_RS03280 0.42 +0.8 668,906 - LU632_RS03280 0.42 +1.7 669,140 + LU632_RS03280 0.46 -0.7 669,140 + LU632_RS03280 0.46 -0.7 669,141 - LU632_RS03280 0.46 +0.1 669,180 + LU632_RS03280 0.47 -2.9 669,247 + LU632_RS03280 0.48 +0.6 669,378 + LU632_RS03280 0.50 +0.6 669,443 + LU632_RS03280 0.52 +1.7 669,444 - LU632_RS03280 0.52 +0.9 669,475 + LU632_RS03280 0.52 +1.9 669,476 - LU632_RS03280 0.52 +0.1 669,476 - LU632_RS03280 0.52 -2.6 669,476 - LU632_RS03280 0.52 +0.7 669,478 - LU632_RS03280 0.52 -0.8 669,608 + LU632_RS03280 0.55 +0.8 669,609 - LU632_RS03280 0.55 +0.2 669,808 + LU632_RS03280 0.58 -0.9 669,809 - LU632_RS03280 0.58 -0.7 669,809 - LU632_RS03280 0.58 +1.4 669,809 - LU632_RS03280 0.58 -0.3 669,881 + LU632_RS03280 0.60 +1.3 669,881 + LU632_RS03280 0.60 +0.5 669,929 + LU632_RS03280 0.61 +1.2 669,930 - LU632_RS03280 0.61 +3.0 669,977 - LU632_RS03280 0.62 -1.3 670,119 + LU632_RS03280 0.64 +0.0 670,119 + LU632_RS03280 0.64 +0.6 670,120 - LU632_RS03280 0.64 -2.8 670,121 + LU632_RS03280 0.64 +1.0 670,122 - LU632_RS03280 0.64 +0.4 670,122 - LU632_RS03280 0.64 +0.7 670,184 + LU632_RS03280 0.66 -0.9 670,333 - LU632_RS03280 0.68 -0.2 670,370 + LU632_RS03280 0.69 +2.0 670,425 + LU632_RS03280 0.70 +1.4 670,426 - LU632_RS03280 0.70 +2.9 670,426 - LU632_RS03280 0.70 -0.7 670,466 + LU632_RS03280 0.71 -0.0 670,518 + LU632_RS03280 0.72 -2.0 670,526 - LU632_RS03280 0.72 -1.7 670,526 - LU632_RS03280 0.72 +0.1 670,533 + LU632_RS03280 0.72 -0.9 670,533 + LU632_RS03280 0.72 +0.4 670,534 - LU632_RS03280 0.72 +0.5 670,534 - LU632_RS03280 0.72 +1.3 670,534 - LU632_RS03280 0.72 +0.8 670,535 + LU632_RS03280 0.72 +1.0 670,535 + LU632_RS03280 0.72 +1.6 670,536 - LU632_RS03280 0.72 +0.3 670,536 - LU632_RS03280 0.72 +2.1 670,536 - LU632_RS03280 0.72 -3.0 670,536 - LU632_RS03280 0.72 +3.3 670,536 - LU632_RS03280 0.72 +1.2 670,536 - LU632_RS03280 0.72 +0.1 670,536 - LU632_RS03280 0.72 +0.7 670,536 - LU632_RS03280 0.72 -0.3 670,791 + LU632_RS03280 0.77 -0.0 670,791 + LU632_RS03280 0.77 +0.9 670,792 - LU632_RS03280 0.77 +0.0 670,908 - LU632_RS03280 0.79 -0.3 670,980 - LU632_RS03280 0.80 -0.9 671,099 + LU632_RS03280 0.83 +3.2 671,100 - LU632_RS03280 0.83 -0.3 671,126 + LU632_RS03280 0.83 -0.0 671,477 + LU632_RS03280 0.90 +3.5 671,477 + LU632_RS03280 0.90 -1.6 671,481 + LU632_RS03280 0.90 -1.2 671,481 + LU632_RS03280 0.90 +0.2 671,482 - LU632_RS03280 0.90 -0.1 671,482 - LU632_RS03280 0.90 -0.9 671,482 - LU632_RS03280 0.90 -0.5 671,482 - LU632_RS03280 0.90 -0.6 671,487 - LU632_RS03280 0.90 -0.3 671,513 + -0.3 671,528 - +0.9 671,614 + -0.6 671,615 - +0.8 671,647 - -0.0 671,819 + +0.4 671,899 - -1.3 671,899 - +0.9 672,187 - LU632_RS03285 0.26 -0.1 672,356 - LU632_RS03285 0.67 +3.2 672,463 - +0.7 672,507 + +0.7 672,508 - -1.9 672,747 + +0.7 672,749 + +1.4 672,772 - +3.0 672,885 + LU632_RS03290 0.13 +1.0
Or see this region's nucleotide sequence