Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nadR and LU632_RS02560 are separated by 23 nucleotides LU632_RS02560 and ettA are separated by 317 nucleotides ettA and LU632_RS02570 are separated by 691 nucleotides
LU632_RS02555: nadR - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 507,760 to 508,986
nadR
LU632_RS02560: LU632_RS02560 - zinc-binding dehydrogenase, at 509,010 to 509,411
_RS02560
LU632_RS02565: ettA - energy-dependent translational throttle protein EttA, at 509,729 to 511,396
ettA
LU632_RS02570: LU632_RS02570 - cation-translocating P-type ATPase C-terminal domain-containing protein, at 512,088 to 512,538
_RS02570
Position (kb) 509
510
511
512 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 508.800 kb on + strand, within nadR at 508.800 kb on + strand, within nadR at 508.800 kb on + strand, within nadR at 508.843 kb on - strand, within nadR at 508.854 kb on + strand, within nadR at 508.897 kb on - strand at 508.926 kb on + strand at 508.930 kb on + strand at 508.930 kb on + strand at 508.930 kb on - strand at 508.931 kb on - strand at 509.196 kb on + strand, within LU632_RS02560 at 509.197 kb on - strand, within LU632_RS02560 at 509.248 kb on - strand, within LU632_RS02560 at 509.314 kb on - strand, within LU632_RS02560 at 509.363 kb on + strand, within LU632_RS02560 at 509.365 kb on + strand, within LU632_RS02560 at 509.443 kb on + strand at 509.443 kb on + strand at 509.443 kb on + strand at 509.444 kb on - strand at 509.485 kb on + strand at 509.533 kb on + strand at 509.537 kb on + strand at 509.537 kb on + strand at 509.537 kb on + strand at 509.637 kb on + strand at 509.638 kb on - strand at 509.660 kb on + strand at 509.660 kb on + strand at 509.661 kb on - strand at 509.676 kb on - strand at 509.731 kb on - strand at 509.731 kb on - strand at 509.753 kb on - strand at 509.753 kb on - strand at 509.755 kb on + strand at 509.756 kb on - strand at 509.798 kb on - strand at 509.867 kb on - strand at 509.879 kb on - strand at 510.103 kb on + strand, within ettA at 510.185 kb on + strand, within ettA at 510.199 kb on + strand, within ettA at 510.199 kb on + strand, within ettA at 510.200 kb on - strand, within ettA at 510.407 kb on - strand, within ettA at 510.535 kb on + strand, within ettA at 510.666 kb on + strand, within ettA at 510.666 kb on + strand, within ettA at 510.666 kb on + strand, within ettA at 510.666 kb on + strand, within ettA at 510.666 kb on + strand, within ettA at 510.667 kb on - strand, within ettA at 510.667 kb on - strand, within ettA at 510.670 kb on + strand, within ettA at 510.671 kb on - strand, within ettA at 510.945 kb on - strand, within ettA at 510.945 kb on - strand, within ettA at 510.982 kb on + strand, within ettA at 511.074 kb on + strand, within ettA at 511.153 kb on + strand, within ettA at 511.153 kb on + strand, within ettA at 511.158 kb on - strand, within ettA at 511.158 kb on - strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.221 kb on - strand, within ettA at 511.221 kb on - strand, within ettA at 511.264 kb on + strand at 511.264 kb on + strand at 511.265 kb on - strand at 511.265 kb on - strand at 511.398 kb on + strand at 511.399 kb on - strand at 511.399 kb on - strand at 511.573 kb on - strand at 511.597 kb on - strand at 511.660 kb on - strand at 511.674 kb on + strand at 511.688 kb on - strand at 511.858 kb on + strand at 511.859 kb on - strand at 511.862 kb on + strand at 511.862 kb on + strand at 511.863 kb on - strand at 511.863 kb on - strand at 511.863 kb on - strand at 511.976 kb on - strand at 511.976 kb on - strand at 512.109 kb on - strand at 512.196 kb on + strand, within LU632_RS02570 at 512.209 kb on - strand, within LU632_RS02570 at 512.291 kb on + strand, within LU632_RS02570 at 512.291 kb on + strand, within LU632_RS02570 at 512.291 kb on + strand, within LU632_RS02570 at 512.344 kb on + strand, within LU632_RS02570 at 512.344 kb on + strand, within LU632_RS02570 at 512.345 kb on - strand, within LU632_RS02570 at 512.351 kb on + strand, within LU632_RS02570 at 512.351 kb on + strand, within LU632_RS02570 at 512.352 kb on - strand, within LU632_RS02570
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 508,800 + nadR LU632_RS02555 0.85 -0.7 508,800 + nadR LU632_RS02555 0.85 -1.5 508,800 + nadR LU632_RS02555 0.85 -1.8 508,843 - nadR LU632_RS02555 0.88 -1.2 508,854 + nadR LU632_RS02555 0.89 -2.7 508,897 - -3.3 508,926 + +0.8 508,930 + -2.2 508,930 + -3.4 508,930 - -3.9 508,931 - -1.2 509,196 + LU632_RS02560 0.46 +1.3 509,197 - LU632_RS02560 0.47 -2.0 509,248 - LU632_RS02560 0.59 -0.9 509,314 - LU632_RS02560 0.76 -0.2 509,363 + LU632_RS02560 0.88 -1.5 509,365 + LU632_RS02560 0.88 +0.6 509,443 + +0.1 509,443 + -0.8 509,443 + -2.2 509,444 - -2.3 509,485 + +2.3 509,533 + +1.6 509,537 + -0.5 509,537 + -0.5 509,537 + +1.5 509,637 + -0.5 509,638 - -1.1 509,660 + -1.2 509,660 + -0.5 509,661 - +0.6 509,676 - +0.2 509,731 - -0.6 509,731 - +0.9 509,753 - +0.8 509,753 - +0.3 509,755 + -1.0 509,756 - -2.8 509,798 - -0.0 509,867 - -0.9 509,879 - +1.5 510,103 + ettA LU632_RS02565 0.22 -1.5 510,185 + ettA LU632_RS02565 0.27 +0.5 510,199 + ettA LU632_RS02565 0.28 -1.5 510,199 + ettA LU632_RS02565 0.28 -1.8 510,200 - ettA LU632_RS02565 0.28 +2.4 510,407 - ettA LU632_RS02565 0.41 +0.2 510,535 + ettA LU632_RS02565 0.48 -0.2 510,666 + ettA LU632_RS02565 0.56 -1.5 510,666 + ettA LU632_RS02565 0.56 +0.8 510,666 + ettA LU632_RS02565 0.56 -0.8 510,666 + ettA LU632_RS02565 0.56 -1.9 510,666 + ettA LU632_RS02565 0.56 -0.0 510,667 - ettA LU632_RS02565 0.56 -2.9 510,667 - ettA LU632_RS02565 0.56 -1.4 510,670 + ettA LU632_RS02565 0.56 -1.5 510,671 - ettA LU632_RS02565 0.56 -0.1 510,945 - ettA LU632_RS02565 0.73 +1.0 510,945 - ettA LU632_RS02565 0.73 +1.4 510,982 + ettA LU632_RS02565 0.75 +0.3 511,074 + ettA LU632_RS02565 0.81 +0.6 511,153 + ettA LU632_RS02565 0.85 -0.4 511,153 + ettA LU632_RS02565 0.85 +1.1 511,158 - ettA LU632_RS02565 0.86 +0.6 511,158 - ettA LU632_RS02565 0.86 +1.6 511,220 + ettA LU632_RS02565 0.89 -0.8 511,220 + ettA LU632_RS02565 0.89 -0.6 511,220 + ettA LU632_RS02565 0.89 -0.8 511,220 + ettA LU632_RS02565 0.89 -0.2 511,220 + ettA LU632_RS02565 0.89 +1.4 511,220 + ettA LU632_RS02565 0.89 -2.0 511,220 + ettA LU632_RS02565 0.89 +0.8 511,220 + ettA LU632_RS02565 0.89 +0.5 511,221 - ettA LU632_RS02565 0.89 -1.4 511,221 - ettA LU632_RS02565 0.89 +4.1 511,264 + -0.8 511,264 + -0.8 511,265 - +1.3 511,265 - -1.5 511,398 + +0.6 511,399 - +2.1 511,399 - +0.1 511,573 - +0.7 511,597 - -2.5 511,660 - -0.3 511,674 + +1.5 511,688 - +0.8 511,858 + -0.3 511,859 - +0.8 511,862 + +0.7 511,862 + +0.2 511,863 - +1.5 511,863 - +0.6 511,863 - -0.1 511,976 - -0.2 511,976 - +1.0 512,109 - +0.4 512,196 + LU632_RS02570 0.24 +0.8 512,209 - LU632_RS02570 0.27 +0.6 512,291 + LU632_RS02570 0.45 +1.5 512,291 + LU632_RS02570 0.45 -0.8 512,291 + LU632_RS02570 0.45 +1.3 512,344 + LU632_RS02570 0.57 -2.1 512,344 + LU632_RS02570 0.57 +0.3 512,345 - LU632_RS02570 0.57 -1.4 512,351 + LU632_RS02570 0.58 -1.2 512,351 + LU632_RS02570 0.58 -1.3 512,352 - LU632_RS02570 0.59 -1.5
Or see this region's nucleotide sequence