Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02265 and LU632_RS02270 are separated by 812 nucleotides LU632_RS02270 and LU632_RS02275 are separated by 307 nucleotides LU632_RS02275 and LU632_RS02280 are separated by 230 nucleotides
LU632_RS02265: LU632_RS02265 - LysR family transcriptional regulator, at 447,596 to 448,498
_RS02265
LU632_RS02270: LU632_RS02270 - hypothetical protein, at 449,311 to 449,604
_RS02270
LU632_RS02275: LU632_RS02275 - DoxX family protein, at 449,912 to 450,304
_RS02275
LU632_RS02280: LU632_RS02280 - YqjK-like family protein, at 450,535 to 450,816
_RS02280
Position (kb) 449
450 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 448.325 kb on - strand, within LU632_RS02265 at 448.388 kb on + strand, within LU632_RS02265 at 448.389 kb on - strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.396 kb on + strand, within LU632_RS02265 at 448.396 kb on + strand, within LU632_RS02265 at 448.397 kb on - strand, within LU632_RS02265 at 448.397 kb on - strand, within LU632_RS02265 at 448.401 kb on + strand, within LU632_RS02265 at 448.401 kb on + strand, within LU632_RS02265 at 448.402 kb on - strand, within LU632_RS02265 at 448.402 kb on - strand, within LU632_RS02265 at 448.408 kb on + strand at 448.408 kb on + strand at 448.408 kb on + strand at 448.408 kb on + strand at 448.408 kb on + strand at 448.409 kb on - strand at 448.409 kb on - strand at 448.411 kb on + strand at 448.412 kb on - strand at 448.477 kb on - strand at 448.500 kb on + strand at 448.528 kb on + strand at 448.528 kb on + strand at 448.528 kb on + strand at 448.529 kb on - strand at 448.584 kb on + strand at 448.591 kb on - strand at 448.622 kb on + strand at 448.623 kb on - strand at 448.640 kb on - strand at 448.664 kb on - strand at 448.698 kb on - strand at 448.698 kb on - strand at 448.698 kb on - strand at 448.728 kb on - strand at 448.849 kb on - strand at 448.850 kb on + strand at 448.876 kb on - strand at 448.899 kb on - strand at 448.994 kb on + strand at 449.280 kb on - strand at 449.341 kb on - strand, within LU632_RS02270 at 449.408 kb on + strand, within LU632_RS02270 at 449.524 kb on - strand, within LU632_RS02270 at 449.544 kb on + strand, within LU632_RS02270 at 449.600 kb on + strand at 449.657 kb on + strand at 450.062 kb on - strand, within LU632_RS02275 at 450.074 kb on + strand, within LU632_RS02275 at 450.193 kb on + strand, within LU632_RS02275 at 450.194 kb on - strand, within LU632_RS02275 at 450.195 kb on + strand, within LU632_RS02275 at 450.195 kb on + strand, within LU632_RS02275 at 450.195 kb on + strand, within LU632_RS02275 at 450.196 kb on - strand, within LU632_RS02275 at 450.196 kb on - strand, within LU632_RS02275 at 450.196 kb on - strand, within LU632_RS02275 at 450.299 kb on - strand at 450.308 kb on + strand at 450.368 kb on - strand at 450.551 kb on + strand at 450.574 kb on - strand, within LU632_RS02280
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 448,325 - LU632_RS02265 0.81 -1.8 448,388 + LU632_RS02265 0.88 +0.9 448,389 - LU632_RS02265 0.88 +0.2 448,390 + LU632_RS02265 0.88 +1.3 448,390 + LU632_RS02265 0.88 -1.2 448,390 + LU632_RS02265 0.88 -2.0 448,390 + LU632_RS02265 0.88 -0.6 448,390 + LU632_RS02265 0.88 +1.2 448,396 + LU632_RS02265 0.89 -1.5 448,396 + LU632_RS02265 0.89 -0.5 448,397 - LU632_RS02265 0.89 +1.3 448,397 - LU632_RS02265 0.89 -0.4 448,401 + LU632_RS02265 0.89 -1.2 448,401 + LU632_RS02265 0.89 +0.5 448,402 - LU632_RS02265 0.89 +1.2 448,402 - LU632_RS02265 0.89 +3.8 448,408 + -1.6 448,408 + -0.8 448,408 + +0.8 448,408 + -1.1 448,408 + -0.6 448,409 - +0.8 448,409 - +2.3 448,411 + +1.3 448,412 - -0.4 448,477 - +0.4 448,500 + +3.7 448,528 + +1.8 448,528 + +0.7 448,528 + +0.5 448,529 - -1.2 448,584 + -1.8 448,591 - +1.8 448,622 + +0.5 448,623 - -0.4 448,640 - +0.6 448,664 - +1.4 448,698 - -3.8 448,698 - -0.5 448,698 - -1.5 448,728 - -2.0 448,849 - -3.2 448,850 + +0.1 448,876 - +0.8 448,899 - -0.2 448,994 + +2.0 449,280 - -0.4 449,341 - LU632_RS02270 0.10 -1.9 449,408 + LU632_RS02270 0.33 -1.5 449,524 - LU632_RS02270 0.72 -0.5 449,544 + LU632_RS02270 0.79 -2.6 449,600 + -0.6 449,657 + -0.1 450,062 - LU632_RS02275 0.38 -0.2 450,074 + LU632_RS02275 0.41 -1.2 450,193 + LU632_RS02275 0.72 +1.8 450,194 - LU632_RS02275 0.72 +0.3 450,195 + LU632_RS02275 0.72 -0.8 450,195 + LU632_RS02275 0.72 -0.3 450,195 + LU632_RS02275 0.72 -0.9 450,196 - LU632_RS02275 0.72 -1.2 450,196 - LU632_RS02275 0.72 -2.5 450,196 - LU632_RS02275 0.72 +0.3 450,299 - -0.3 450,308 + +0.5 450,368 - +2.0 450,551 + +1.5 450,574 - LU632_RS02280 0.14 +1.0
Or see this region's nucleotide sequence