Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02250 and LU632_RS02255 are separated by 522 nucleotides LU632_RS02255 and LU632_RS02260 are separated by 83 nucleotides LU632_RS02260 and LU632_RS02265 are separated by 123 nucleotides
LU632_RS02250: LU632_RS02250 - aldose 1-epimerase family protein, at 444,378 to 445,586
_RS02250
LU632_RS02255: LU632_RS02255 - UPF0149 family protein, at 446,109 to 446,684
_RS02255
LU632_RS02260: LU632_RS02260 - pirin family protein, at 446,768 to 447,472
_RS02260
LU632_RS02265: LU632_RS02265 - LysR family transcriptional regulator, at 447,596 to 448,498
_RS02265
Position (kb) 446
447 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 445.263 kb on - strand, within LU632_RS02250 at 445.265 kb on - strand, within LU632_RS02250 at 445.301 kb on + strand, within LU632_RS02250 at 445.304 kb on + strand, within LU632_RS02250 at 445.304 kb on + strand, within LU632_RS02250 at 445.392 kb on + strand, within LU632_RS02250 at 445.392 kb on + strand, within LU632_RS02250 at 445.392 kb on + strand, within LU632_RS02250 at 445.393 kb on - strand, within LU632_RS02250 at 445.393 kb on - strand, within LU632_RS02250 at 445.393 kb on - strand, within LU632_RS02250 at 445.476 kb on + strand at 445.476 kb on + strand at 445.476 kb on + strand at 445.476 kb on + strand at 445.505 kb on - strand at 445.585 kb on - strand at 445.585 kb on - strand at 445.633 kb on - strand at 445.713 kb on - strand at 445.713 kb on - strand at 445.720 kb on - strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.726 kb on - strand at 445.726 kb on - strand at 445.726 kb on - strand at 445.913 kb on + strand at 445.913 kb on + strand at 445.957 kb on - strand at 445.966 kb on + strand at 446.007 kb on + strand at 446.032 kb on - strand at 446.042 kb on - strand at 446.046 kb on + strand at 446.046 kb on + strand at 446.046 kb on + strand at 446.046 kb on + strand at 446.049 kb on - strand at 446.061 kb on - strand at 446.064 kb on - strand at 446.089 kb on + strand at 446.089 kb on + strand at 446.089 kb on + strand at 446.089 kb on + strand at 446.090 kb on - strand at 446.090 kb on - strand at 446.090 kb on - strand at 446.091 kb on + strand at 446.092 kb on - strand at 446.195 kb on + strand, within LU632_RS02255 at 446.355 kb on - strand, within LU632_RS02255 at 446.378 kb on + strand, within LU632_RS02255 at 446.513 kb on + strand, within LU632_RS02255 at 446.514 kb on - strand, within LU632_RS02255 at 446.582 kb on + strand, within LU632_RS02255 at 446.583 kb on - strand, within LU632_RS02255 at 446.583 kb on - strand, within LU632_RS02255 at 446.712 kb on + strand at 446.712 kb on - strand at 446.740 kb on - strand at 446.799 kb on - strand at 446.842 kb on + strand, within LU632_RS02260 at 446.864 kb on - strand, within LU632_RS02260 at 446.864 kb on - strand, within LU632_RS02260 at 446.864 kb on - strand, within LU632_RS02260 at 446.891 kb on + strand, within LU632_RS02260 at 446.891 kb on + strand, within LU632_RS02260 at 446.922 kb on - strand, within LU632_RS02260 at 446.922 kb on - strand, within LU632_RS02260 at 446.925 kb on + strand, within LU632_RS02260 at 446.926 kb on - strand, within LU632_RS02260 at 446.950 kb on + strand, within LU632_RS02260 at 446.972 kb on + strand, within LU632_RS02260 at 447.011 kb on + strand, within LU632_RS02260 at 447.011 kb on + strand, within LU632_RS02260 at 447.011 kb on + strand, within LU632_RS02260 at 447.122 kb on + strand, within LU632_RS02260 at 447.176 kb on + strand, within LU632_RS02260 at 447.297 kb on + strand, within LU632_RS02260 at 447.343 kb on + strand, within LU632_RS02260 at 447.363 kb on + strand, within LU632_RS02260 at 447.387 kb on + strand, within LU632_RS02260 at 447.506 kb on + strand at 447.507 kb on - strand at 447.511 kb on + strand at 447.511 kb on + strand at 447.512 kb on - strand at 447.512 kb on - strand at 447.512 kb on - strand at 447.554 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 445,263 - LU632_RS02250 0.73 +0.5 445,265 - LU632_RS02250 0.73 -0.7 445,301 + LU632_RS02250 0.76 -2.0 445,304 + LU632_RS02250 0.77 -0.5 445,304 + LU632_RS02250 0.77 -0.4 445,392 + LU632_RS02250 0.84 +0.1 445,392 + LU632_RS02250 0.84 -0.3 445,392 + LU632_RS02250 0.84 -0.1 445,393 - LU632_RS02250 0.84 -2.7 445,393 - LU632_RS02250 0.84 +3.2 445,393 - LU632_RS02250 0.84 +0.5 445,476 + +1.2 445,476 + -0.2 445,476 + -2.7 445,476 + +1.1 445,505 - -0.7 445,585 - -0.7 445,585 - -1.6 445,633 - +0.6 445,713 - -0.5 445,713 - -2.1 445,720 - +0.7 445,725 + -0.4 445,725 + +1.5 445,725 + -1.1 445,725 + -0.1 445,725 + -3.2 445,726 - +0.6 445,726 - +1.3 445,726 - +0.5 445,913 + +0.2 445,913 + -2.3 445,957 - +1.0 445,966 + +0.3 446,007 + -0.5 446,032 - -1.7 446,042 - +1.4 446,046 + +2.0 446,046 + -0.9 446,046 + +0.8 446,046 + +4.3 446,049 - +0.8 446,061 - +1.6 446,064 - -2.5 446,089 + -1.2 446,089 + -0.2 446,089 + -1.9 446,089 + -0.0 446,090 - +1.0 446,090 - -0.3 446,090 - -0.7 446,091 + +0.8 446,092 - +0.9 446,195 + LU632_RS02255 0.15 -0.8 446,355 - LU632_RS02255 0.43 -1.2 446,378 + LU632_RS02255 0.47 +2.0 446,513 + LU632_RS02255 0.70 -0.8 446,514 - LU632_RS02255 0.70 -1.2 446,582 + LU632_RS02255 0.82 +2.4 446,583 - LU632_RS02255 0.82 +1.4 446,583 - LU632_RS02255 0.82 -0.1 446,712 + -0.2 446,712 - +1.3 446,740 - -3.9 446,799 - +1.0 446,842 + LU632_RS02260 0.10 -0.3 446,864 - LU632_RS02260 0.14 -0.4 446,864 - LU632_RS02260 0.14 +2.4 446,864 - LU632_RS02260 0.14 -1.2 446,891 + LU632_RS02260 0.17 +0.6 446,891 + LU632_RS02260 0.17 -3.0 446,922 - LU632_RS02260 0.22 -2.2 446,922 - LU632_RS02260 0.22 +0.5 446,925 + LU632_RS02260 0.22 -0.1 446,926 - LU632_RS02260 0.22 -2.1 446,950 + LU632_RS02260 0.26 -1.2 446,972 + LU632_RS02260 0.29 +0.8 447,011 + LU632_RS02260 0.34 -1.9 447,011 + LU632_RS02260 0.34 +0.8 447,011 + LU632_RS02260 0.34 +1.4 447,122 + LU632_RS02260 0.50 +1.6 447,176 + LU632_RS02260 0.58 +0.1 447,297 + LU632_RS02260 0.75 -0.1 447,343 + LU632_RS02260 0.82 -1.5 447,363 + LU632_RS02260 0.84 -2.5 447,387 + LU632_RS02260 0.88 -1.3 447,506 + +0.4 447,507 - -0.8 447,511 + +0.5 447,511 + -2.3 447,512 - +0.5 447,512 - -0.7 447,512 - -0.4 447,554 + +1.3
Or see this region's nucleotide sequence