Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hflX and hflK are separated by 67 nucleotides hflK and hflC are separated by 3 nucleotides
LU632_RS02060: hflX - GTPase HflX, at 404,585 to 405,865
hflX
LU632_RS02065: hflK - FtsH protease activity modulator HflK, at 405,933 to 407,174
hflK
LU632_RS02070: hflC - protease modulator HflC, at 407,178 to 408,188
hflC
Position (kb) 405
406
407
408 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 405.082 kb on - strand, within hflX at 405.094 kb on + strand, within hflX at 405.094 kb on + strand, within hflX at 405.095 kb on - strand, within hflX at 405.097 kb on + strand, within hflX at 405.098 kb on - strand, within hflX at 405.098 kb on - strand, within hflX at 405.098 kb on - strand, within hflX at 405.223 kb on - strand, within hflX at 405.223 kb on - strand, within hflX at 405.251 kb on + strand, within hflX at 405.331 kb on - strand, within hflX at 405.454 kb on + strand, within hflX at 405.455 kb on - strand, within hflX at 405.591 kb on + strand, within hflX at 405.688 kb on + strand, within hflX at 405.795 kb on + strand at 405.799 kb on + strand at 405.854 kb on + strand at 405.855 kb on - strand at 405.880 kb on + strand at 405.915 kb on + strand at 406.398 kb on + strand, within hflK at 406.423 kb on - strand, within hflK at 406.480 kb on + strand, within hflK at 406.613 kb on + strand, within hflK at 406.695 kb on + strand, within hflK at 406.695 kb on + strand, within hflK at 406.696 kb on - strand, within hflK at 406.782 kb on + strand, within hflK at 406.885 kb on - strand, within hflK at 407.307 kb on - strand, within hflC at 407.317 kb on + strand, within hflC at 407.452 kb on - strand, within hflC at 407.622 kb on - strand, within hflC at 407.847 kb on + strand, within hflC at 408.057 kb on + strand, within hflC at 408.058 kb on - strand, within hflC at 408.065 kb on + strand, within hflC
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 405,082 - hflX LU632_RS02060 0.39 +0.9 405,094 + hflX LU632_RS02060 0.40 -0.7 405,094 + hflX LU632_RS02060 0.40 +0.3 405,095 - hflX LU632_RS02060 0.40 +2.9 405,097 + hflX LU632_RS02060 0.40 +0.9 405,098 - hflX LU632_RS02060 0.40 -1.1 405,098 - hflX LU632_RS02060 0.40 -1.1 405,098 - hflX LU632_RS02060 0.40 -3.1 405,223 - hflX LU632_RS02060 0.50 -1.1 405,223 - hflX LU632_RS02060 0.50 -0.7 405,251 + hflX LU632_RS02060 0.52 -0.9 405,331 - hflX LU632_RS02060 0.58 -3.5 405,454 + hflX LU632_RS02060 0.68 -0.6 405,455 - hflX LU632_RS02060 0.68 -0.1 405,591 + hflX LU632_RS02060 0.79 +1.2 405,688 + hflX LU632_RS02060 0.86 -2.6 405,795 + +0.2 405,799 + -0.3 405,854 + -1.3 405,855 - -2.8 405,880 + -0.5 405,915 + -1.1 406,398 + hflK LU632_RS02065 0.37 -2.9 406,423 - hflK LU632_RS02065 0.39 -0.7 406,480 + hflK LU632_RS02065 0.44 -3.0 406,613 + hflK LU632_RS02065 0.55 -0.1 406,695 + hflK LU632_RS02065 0.61 -1.1 406,695 + hflK LU632_RS02065 0.61 -2.6 406,696 - hflK LU632_RS02065 0.61 -1.1 406,782 + hflK LU632_RS02065 0.68 -0.1 406,885 - hflK LU632_RS02065 0.77 -1.9 407,307 - hflC LU632_RS02070 0.13 -0.7 407,317 + hflC LU632_RS02070 0.14 -1.5 407,452 - hflC LU632_RS02070 0.27 -1.5 407,622 - hflC LU632_RS02070 0.44 -1.5 407,847 + hflC LU632_RS02070 0.66 -2.5 408,057 + hflC LU632_RS02070 0.87 -1.5 408,058 - hflC LU632_RS02070 0.87 -0.1 408,065 + hflC LU632_RS02070 0.88 -3.9
Or see this region's nucleotide sequence