Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt epmB and efp are separated by 42 nucleotides efp and LU632_RS01890 are separated by 55 nucleotides LU632_RS01890 and LU632_RS01895 are separated by 104 nucleotides LU632_RS01895 and blc are separated by 312 nucleotides blc and frdD are separated by 76 nucleotides
LU632_RS01880: epmB - EF-P beta-lysylation protein EpmB, at 361,286 to 362,314
epmB
LU632_RS01885: efp - elongation factor P, at 362,357 to 362,923
efp
LU632_RS01890: LU632_RS01890 - entericidin A/B family lipoprotein, at 362,979 to 363,110
_RS01890
LU632_RS01895: LU632_RS01895 - ECN family pore-forming entericidin, at 363,215 to 363,349
_RS01895
LU632_RS01900: blc - outer membrane lipoprotein Blc, at 363,662 to 364,186
blc
LU632_RS01905: frdD - fumarate reductase subunit FrdD, at 364,263 to 364,616
frdD
Position (kb) 363
364 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 362.995 kb on + strand, within LU632_RS01890 at 362.996 kb on - strand, within LU632_RS01890 at 362.999 kb on + strand, within LU632_RS01890 at 362.999 kb on + strand, within LU632_RS01890 at 362.999 kb on + strand, within LU632_RS01890 at 363.000 kb on - strand, within LU632_RS01890 at 363.109 kb on - strand at 363.200 kb on + strand at 363.214 kb on + strand at 363.214 kb on + strand at 363.214 kb on + strand at 363.215 kb on - strand at 363.215 kb on - strand at 363.215 kb on - strand at 363.215 kb on - strand at 363.312 kb on + strand, within LU632_RS01895 at 363.312 kb on + strand, within LU632_RS01895 at 363.313 kb on - strand, within LU632_RS01895 at 363.348 kb on - strand at 363.350 kb on + strand at 363.353 kb on + strand at 363.366 kb on + strand at 363.463 kb on + strand at 363.465 kb on + strand at 363.465 kb on + strand at 363.598 kb on + strand at 363.664 kb on - strand at 363.664 kb on - strand at 363.736 kb on + strand, within blc at 363.739 kb on + strand, within blc at 363.739 kb on + strand, within blc at 363.740 kb on - strand, within blc at 363.785 kb on - strand, within blc at 363.852 kb on + strand, within blc at 363.909 kb on + strand, within blc at 363.952 kb on + strand, within blc at 363.952 kb on + strand, within blc at 363.952 kb on + strand, within blc at 363.952 kb on + strand, within blc at 363.952 kb on + strand, within blc at 363.952 kb on + strand, within blc at 363.953 kb on - strand, within blc at 363.953 kb on - strand, within blc at 363.953 kb on - strand, within blc at 364.074 kb on + strand, within blc at 364.075 kb on - strand, within blc at 364.107 kb on - strand, within blc at 364.123 kb on + strand, within blc at 364.123 kb on + strand, within blc at 364.123 kb on + strand, within blc at 364.186 kb on + strand at 364.186 kb on + strand at 364.186 kb on + strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.199 kb on + strand at 364.219 kb on + strand at 364.221 kb on + strand at 364.221 kb on + strand at 364.265 kb on - strand at 364.284 kb on + strand at 364.285 kb on - strand at 364.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 362,995 + LU632_RS01890 0.12 -1.2 362,996 - LU632_RS01890 0.13 +2.4 362,999 + LU632_RS01890 0.15 +1.4 362,999 + LU632_RS01890 0.15 +0.3 362,999 + LU632_RS01890 0.15 +0.3 363,000 - LU632_RS01890 0.16 +0.7 363,109 - -1.4 363,200 + -0.8 363,214 + +0.8 363,214 + -2.2 363,214 + +2.3 363,215 - -0.8 363,215 - -1.5 363,215 - +1.6 363,215 - +0.3 363,312 + LU632_RS01895 0.72 -1.8 363,312 + LU632_RS01895 0.72 -1.2 363,313 - LU632_RS01895 0.73 -1.6 363,348 - -3.1 363,350 + +1.0 363,353 + +0.8 363,366 + +0.8 363,463 + +0.6 363,465 + +1.4 363,465 + -2.5 363,598 + -2.3 363,664 - +2.1 363,664 - -4.0 363,736 + blc LU632_RS01900 0.14 +1.0 363,739 + blc LU632_RS01900 0.15 -0.4 363,739 + blc LU632_RS01900 0.15 -1.8 363,740 - blc LU632_RS01900 0.15 -2.1 363,785 - blc LU632_RS01900 0.23 +0.2 363,852 + blc LU632_RS01900 0.36 -1.0 363,909 + blc LU632_RS01900 0.47 +0.8 363,952 + blc LU632_RS01900 0.55 -0.3 363,952 + blc LU632_RS01900 0.55 +0.3 363,952 + blc LU632_RS01900 0.55 -0.3 363,952 + blc LU632_RS01900 0.55 +3.4 363,952 + blc LU632_RS01900 0.55 +0.0 363,952 + blc LU632_RS01900 0.55 +3.0 363,953 - blc LU632_RS01900 0.55 +0.0 363,953 - blc LU632_RS01900 0.55 -0.2 363,953 - blc LU632_RS01900 0.55 +0.4 364,074 + blc LU632_RS01900 0.78 +2.1 364,075 - blc LU632_RS01900 0.79 -1.4 364,107 - blc LU632_RS01900 0.85 -0.8 364,123 + blc LU632_RS01900 0.88 +0.8 364,123 + blc LU632_RS01900 0.88 +1.7 364,123 + blc LU632_RS01900 0.88 -0.2 364,186 + +0.2 364,186 + +1.1 364,186 + +0.3 364,187 - +0.2 364,187 - +2.5 364,187 - +1.1 364,187 - -0.2 364,187 - -1.1 364,187 - +2.7 364,187 - -0.1 364,187 - +2.1 364,187 - +0.1 364,187 - +0.2 364,199 + +2.8 364,219 + -0.5 364,221 + -2.5 364,221 + -1.2 364,265 - +1.8 364,284 + +0.0 364,285 - +0.2 364,285 - -0.6
Or see this region's nucleotide sequence