Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01680 and LU632_RS01685 are separated by 5 nucleotides LU632_RS01685 and LU632_RS01690 are separated by 48 nucleotides LU632_RS01690 and LU632_RS01695 are separated by 0 nucleotides LU632_RS01695 and LU632_RS01700 are separated by 150 nucleotides
LU632_RS01680: LU632_RS01680 - GpE family phage tail protein, at 332,458 to 332,613
_RS01680
LU632_RS01685: LU632_RS01685 - phage tail assembly protein, at 332,619 to 332,936
_RS01685
LU632_RS01690: LU632_RS01690 - phage major tail tube protein, at 332,985 to 333,500
_RS01690
LU632_RS01695: LU632_RS01695 - phage tail sheath family protein, at 333,501 to 334,682
_RS01695
LU632_RS01700: LU632_RS01700 - phage late control D family protein, at 334,833 to 335,969
_RS01700
Position (kb) 333
334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 332.567 kb on - strand, within LU632_RS01680 at 332.567 kb on - strand, within LU632_RS01680 at 332.795 kb on + strand, within LU632_RS01685 at 332.863 kb on - strand, within LU632_RS01685 at 332.870 kb on + strand, within LU632_RS01685 at 332.871 kb on - strand, within LU632_RS01685 at 332.974 kb on + strand at 332.974 kb on + strand at 333.012 kb on - strand at 333.029 kb on + strand at 333.049 kb on + strand, within LU632_RS01690 at 333.098 kb on + strand, within LU632_RS01690 at 333.099 kb on - strand, within LU632_RS01690 at 333.106 kb on + strand, within LU632_RS01690 at 333.106 kb on + strand, within LU632_RS01690 at 333.107 kb on - strand, within LU632_RS01690 at 333.109 kb on + strand, within LU632_RS01690 at 333.109 kb on + strand, within LU632_RS01690 at 333.109 kb on + strand, within LU632_RS01690 at 333.109 kb on + strand, within LU632_RS01690 at 333.110 kb on - strand, within LU632_RS01690 at 333.110 kb on - strand, within LU632_RS01690 at 333.229 kb on + strand, within LU632_RS01690 at 333.229 kb on + strand, within LU632_RS01690 at 333.229 kb on + strand, within LU632_RS01690 at 333.229 kb on + strand, within LU632_RS01690 at 333.230 kb on - strand, within LU632_RS01690 at 333.232 kb on + strand, within LU632_RS01690 at 333.233 kb on - strand, within LU632_RS01690 at 333.277 kb on + strand, within LU632_RS01690 at 333.278 kb on - strand, within LU632_RS01690 at 333.354 kb on + strand, within LU632_RS01690 at 333.444 kb on - strand, within LU632_RS01690 at 333.502 kb on + strand at 333.502 kb on + strand at 333.503 kb on - strand at 333.503 kb on - strand at 333.503 kb on - strand at 333.503 kb on - strand at 333.503 kb on - strand at 333.538 kb on + strand at 333.595 kb on + strand at 333.595 kb on + strand at 333.595 kb on + strand at 333.595 kb on + strand at 333.596 kb on - strand at 333.596 kb on - strand at 333.596 kb on - strand at 333.596 kb on - strand at 333.599 kb on + strand at 333.599 kb on + strand at 333.762 kb on - strand, within LU632_RS01695 at 333.762 kb on - strand, within LU632_RS01695 at 333.821 kb on + strand, within LU632_RS01695 at 333.823 kb on + strand, within LU632_RS01695 at 333.839 kb on - strand, within LU632_RS01695 at 333.839 kb on - strand, within LU632_RS01695 at 333.839 kb on - strand, within LU632_RS01695 at 333.839 kb on - strand, within LU632_RS01695 at 333.893 kb on + strand, within LU632_RS01695 at 334.334 kb on - strand, within LU632_RS01695 at 334.334 kb on - strand, within LU632_RS01695 at 334.334 kb on - strand, within LU632_RS01695 at 334.334 kb on - strand, within LU632_RS01695 at 334.533 kb on + strand, within LU632_RS01695 at 334.656 kb on + strand at 334.881 kb on + strand at 335.116 kb on - strand, within LU632_RS01700 at 335.128 kb on - strand, within LU632_RS01700 at 335.215 kb on + strand, within LU632_RS01700 at 335.227 kb on + strand, within LU632_RS01700 at 335.326 kb on + strand, within LU632_RS01700 at 335.456 kb on + strand, within LU632_RS01700 at 335.538 kb on + strand, within LU632_RS01700 at 335.538 kb on + strand, within LU632_RS01700 at 335.539 kb on - strand, within LU632_RS01700 at 335.539 kb on - strand, within LU632_RS01700 at 335.658 kb on + strand, within LU632_RS01700 at 335.658 kb on + strand, within LU632_RS01700 at 335.659 kb on - strand, within LU632_RS01700 at 335.659 kb on - strand, within LU632_RS01700 at 335.659 kb on - strand, within LU632_RS01700
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 332,567 - LU632_RS01680 0.70 -2.4 332,567 - LU632_RS01680 0.70 -0.3 332,795 + LU632_RS01685 0.55 +0.2 332,863 - LU632_RS01685 0.77 +0.8 332,870 + LU632_RS01685 0.79 -3.6 332,871 - LU632_RS01685 0.79 -1.9 332,974 + +0.4 332,974 + +1.3 333,012 - +1.4 333,029 + -1.2 333,049 + LU632_RS01690 0.12 -1.2 333,098 + LU632_RS01690 0.22 -0.9 333,099 - LU632_RS01690 0.22 -0.3 333,106 + LU632_RS01690 0.23 +0.6 333,106 + LU632_RS01690 0.23 +1.6 333,107 - LU632_RS01690 0.24 -2.0 333,109 + LU632_RS01690 0.24 -1.0 333,109 + LU632_RS01690 0.24 +0.8 333,109 + LU632_RS01690 0.24 -0.1 333,109 + LU632_RS01690 0.24 -0.7 333,110 - LU632_RS01690 0.24 +0.1 333,110 - LU632_RS01690 0.24 +0.4 333,229 + LU632_RS01690 0.47 +0.1 333,229 + LU632_RS01690 0.47 -0.1 333,229 + LU632_RS01690 0.47 +2.6 333,229 + LU632_RS01690 0.47 +0.9 333,230 - LU632_RS01690 0.47 +1.5 333,232 + LU632_RS01690 0.48 +0.9 333,233 - LU632_RS01690 0.48 -0.4 333,277 + LU632_RS01690 0.57 +0.4 333,278 - LU632_RS01690 0.57 +0.8 333,354 + LU632_RS01690 0.72 -0.7 333,444 - LU632_RS01690 0.89 +1.4 333,502 + -0.7 333,502 + -0.2 333,503 - -2.6 333,503 - -1.0 333,503 - +0.3 333,503 - +2.4 333,503 - -3.0 333,538 + -0.9 333,595 + -1.8 333,595 + +1.0 333,595 + +1.5 333,595 + -0.8 333,596 - +1.2 333,596 - -1.5 333,596 - -0.8 333,596 - -0.8 333,599 + -0.2 333,599 + +0.3 333,762 - LU632_RS01695 0.22 -1.1 333,762 - LU632_RS01695 0.22 -2.2 333,821 + LU632_RS01695 0.27 -0.4 333,823 + LU632_RS01695 0.27 +0.2 333,839 - LU632_RS01695 0.29 +1.4 333,839 - LU632_RS01695 0.29 +0.2 333,839 - LU632_RS01695 0.29 +2.0 333,839 - LU632_RS01695 0.29 -1.6 333,893 + LU632_RS01695 0.33 +0.7 334,334 - LU632_RS01695 0.70 -0.5 334,334 - LU632_RS01695 0.70 -1.8 334,334 - LU632_RS01695 0.70 -1.5 334,334 - LU632_RS01695 0.70 -0.2 334,533 + LU632_RS01695 0.87 +1.2 334,656 + -0.5 334,881 + -0.5 335,116 - LU632_RS01700 0.25 -1.8 335,128 - LU632_RS01700 0.26 +0.2 335,215 + LU632_RS01700 0.34 -0.6 335,227 + LU632_RS01700 0.35 -0.2 335,326 + LU632_RS01700 0.43 +0.8 335,456 + LU632_RS01700 0.55 +1.2 335,538 + LU632_RS01700 0.62 -3.2 335,538 + LU632_RS01700 0.62 -1.3 335,539 - LU632_RS01700 0.62 -1.2 335,539 - LU632_RS01700 0.62 +0.4 335,658 + LU632_RS01700 0.73 -0.5 335,658 + LU632_RS01700 0.73 +1.4 335,659 - LU632_RS01700 0.73 +0.2 335,659 - LU632_RS01700 0.73 -0.3 335,659 - LU632_RS01700 0.73 -0.2
Or see this region's nucleotide sequence