Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00830 and LU632_RS00835 are separated by 193 nucleotides LU632_RS00835 and zinT are separated by 76 nucleotides zinT and LU632_RS00845 are separated by 181 nucleotides
LU632_RS00830: LU632_RS00830 - SIS domain-containing protein, at 180,669 to 181,694
_RS00830
LU632_RS00835: LU632_RS00835 - DeoR/GlpR family DNA-binding transcription regulator, at 181,888 to 182,664
_RS00835
LU632_RS00840: zinT - metal-binding protein ZinT, at 182,741 to 183,388
zinT
LU632_RS00845: LU632_RS00845 - ABC transporter ATP-binding protein/permease, at 183,570 to 185,403
_RS00845
Position (kb) 181
182
183 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 181.069 kb on - strand, within LU632_RS00830 at 181.137 kb on + strand, within LU632_RS00830 at 181.140 kb on - strand, within LU632_RS00830 at 181.143 kb on - strand, within LU632_RS00830 at 181.183 kb on + strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.185 kb on + strand, within LU632_RS00830 at 181.186 kb on - strand, within LU632_RS00830 at 181.225 kb on + strand, within LU632_RS00830 at 181.226 kb on - strand, within LU632_RS00830 at 181.226 kb on - strand, within LU632_RS00830 at 181.241 kb on + strand, within LU632_RS00830 at 181.334 kb on + strand, within LU632_RS00830 at 181.370 kb on + strand, within LU632_RS00830 at 181.370 kb on + strand, within LU632_RS00830 at 181.495 kb on - strand, within LU632_RS00830 at 181.495 kb on - strand, within LU632_RS00830 at 181.563 kb on + strand, within LU632_RS00830 at 181.564 kb on - strand, within LU632_RS00830 at 181.564 kb on - strand, within LU632_RS00830 at 181.617 kb on - strand at 181.617 kb on - strand at 181.618 kb on + strand at 181.618 kb on + strand at 181.619 kb on - strand at 181.619 kb on - strand at 181.619 kb on - strand at 181.619 kb on - strand at 181.824 kb on + strand at 181.844 kb on + strand at 181.955 kb on + strand at 181.956 kb on - strand at 182.012 kb on + strand, within LU632_RS00835 at 182.054 kb on + strand, within LU632_RS00835 at 182.055 kb on - strand, within LU632_RS00835 at 182.081 kb on - strand, within LU632_RS00835 at 182.095 kb on + strand, within LU632_RS00835 at 182.095 kb on + strand, within LU632_RS00835 at 182.095 kb on + strand, within LU632_RS00835 at 182.096 kb on - strand, within LU632_RS00835 at 182.096 kb on - strand, within LU632_RS00835 at 182.116 kb on - strand, within LU632_RS00835 at 182.250 kb on - strand, within LU632_RS00835 at 182.322 kb on + strand, within LU632_RS00835 at 182.322 kb on + strand, within LU632_RS00835 at 182.322 kb on + strand, within LU632_RS00835 at 182.323 kb on - strand, within LU632_RS00835 at 182.323 kb on - strand, within LU632_RS00835 at 182.323 kb on - strand, within LU632_RS00835 at 182.323 kb on - strand, within LU632_RS00835 at 182.339 kb on - strand, within LU632_RS00835 at 182.339 kb on - strand, within LU632_RS00835 at 182.339 kb on - strand, within LU632_RS00835 at 182.367 kb on + strand, within LU632_RS00835 at 182.417 kb on + strand, within LU632_RS00835 at 182.448 kb on + strand, within LU632_RS00835 at 182.493 kb on + strand, within LU632_RS00835 at 182.565 kb on + strand, within LU632_RS00835 at 182.577 kb on + strand, within LU632_RS00835 at 182.577 kb on + strand, within LU632_RS00835 at 182.617 kb on + strand at 182.692 kb on + strand at 182.692 kb on + strand at 182.910 kb on + strand, within zinT at 182.911 kb on - strand, within zinT at 182.979 kb on + strand, within zinT at 182.979 kb on - strand, within zinT at 182.980 kb on - strand, within zinT at 183.003 kb on + strand, within zinT at 183.004 kb on - strand, within zinT at 183.004 kb on - strand, within zinT at 183.010 kb on - strand, within zinT at 183.068 kb on - strand, within zinT at 183.074 kb on - strand, within zinT at 183.102 kb on + strand, within zinT at 183.102 kb on + strand, within zinT at 183.106 kb on - strand, within zinT at 183.182 kb on + strand, within zinT at 183.183 kb on - strand, within zinT at 183.187 kb on - strand, within zinT at 183.193 kb on + strand, within zinT at 183.449 kb on + strand at 183.451 kb on + strand at 183.452 kb on - strand at 183.504 kb on + strand at 183.637 kb on - strand at 183.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 181,069 - LU632_RS00830 0.39 +0.8 181,137 + LU632_RS00830 0.46 -0.7 181,140 - LU632_RS00830 0.46 +0.7 181,143 - LU632_RS00830 0.46 -1.2 181,183 + LU632_RS00830 0.50 -2.6 181,184 - LU632_RS00830 0.50 -2.2 181,184 - LU632_RS00830 0.50 -0.6 181,184 - LU632_RS00830 0.50 -2.0 181,184 - LU632_RS00830 0.50 -0.2 181,185 + LU632_RS00830 0.50 -0.5 181,186 - LU632_RS00830 0.50 +0.3 181,225 + LU632_RS00830 0.54 +0.8 181,226 - LU632_RS00830 0.54 +2.7 181,226 - LU632_RS00830 0.54 -2.9 181,241 + LU632_RS00830 0.56 -1.2 181,334 + LU632_RS00830 0.65 +3.4 181,370 + LU632_RS00830 0.68 +1.4 181,370 + LU632_RS00830 0.68 +1.1 181,495 - LU632_RS00830 0.81 -0.2 181,495 - LU632_RS00830 0.81 +1.9 181,563 + LU632_RS00830 0.87 -2.2 181,564 - LU632_RS00830 0.87 -1.3 181,564 - LU632_RS00830 0.87 -2.3 181,617 - +0.2 181,617 - -1.6 181,618 + -0.6 181,618 + +0.4 181,619 - -1.2 181,619 - +0.0 181,619 - +0.8 181,619 - +0.8 181,824 + +1.4 181,844 + -3.1 181,955 + -1.7 181,956 - +0.3 182,012 + LU632_RS00835 0.16 -2.0 182,054 + LU632_RS00835 0.21 +0.7 182,055 - LU632_RS00835 0.21 +1.7 182,081 - LU632_RS00835 0.25 +0.8 182,095 + LU632_RS00835 0.27 +2.4 182,095 + LU632_RS00835 0.27 -1.2 182,095 + LU632_RS00835 0.27 +1.9 182,096 - LU632_RS00835 0.27 -2.3 182,096 - LU632_RS00835 0.27 -1.2 182,116 - LU632_RS00835 0.29 +0.2 182,250 - LU632_RS00835 0.47 -1.3 182,322 + LU632_RS00835 0.56 -1.2 182,322 + LU632_RS00835 0.56 +0.6 182,322 + LU632_RS00835 0.56 +1.9 182,323 - LU632_RS00835 0.56 +3.8 182,323 - LU632_RS00835 0.56 +1.0 182,323 - LU632_RS00835 0.56 +1.1 182,323 - LU632_RS00835 0.56 -2.3 182,339 - LU632_RS00835 0.58 -0.2 182,339 - LU632_RS00835 0.58 +0.4 182,339 - LU632_RS00835 0.58 +0.8 182,367 + LU632_RS00835 0.62 +1.3 182,417 + LU632_RS00835 0.68 -1.3 182,448 + LU632_RS00835 0.72 -1.2 182,493 + LU632_RS00835 0.78 +0.1 182,565 + LU632_RS00835 0.87 -1.7 182,577 + LU632_RS00835 0.89 -1.5 182,577 + LU632_RS00835 0.89 -0.6 182,617 + -1.5 182,692 + -1.4 182,692 + +0.4 182,910 + zinT LU632_RS00840 0.26 +0.2 182,911 - zinT LU632_RS00840 0.26 +2.4 182,979 + zinT LU632_RS00840 0.37 -0.2 182,979 - zinT LU632_RS00840 0.37 -0.7 182,980 - zinT LU632_RS00840 0.37 +1.8 183,003 + zinT LU632_RS00840 0.40 +2.5 183,004 - zinT LU632_RS00840 0.41 -1.7 183,004 - zinT LU632_RS00840 0.41 -2.2 183,010 - zinT LU632_RS00840 0.42 -2.2 183,068 - zinT LU632_RS00840 0.50 +1.3 183,074 - zinT LU632_RS00840 0.51 +1.0 183,102 + zinT LU632_RS00840 0.56 +0.4 183,102 + zinT LU632_RS00840 0.56 -2.0 183,106 - zinT LU632_RS00840 0.56 -0.3 183,182 + zinT LU632_RS00840 0.68 +0.6 183,183 - zinT LU632_RS00840 0.68 -0.0 183,187 - zinT LU632_RS00840 0.69 +1.5 183,193 + zinT LU632_RS00840 0.70 -1.2 183,449 + +0.8 183,451 + +0.7 183,452 - -0.5 183,504 + -2.0 183,637 - -1.7 183,656 - -1.0
Or see this region's nucleotide sequence