Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt vgrG and LU632_RS00755 are separated by 123 nucleotides LU632_RS00755 and LU632_RS00760 are separated by 62 nucleotides LU632_RS00760 and LU632_RS00765 are separated by 18 nucleotides
LU632_RS00750: vgrG - type VI secretion system tip protein VgrG, at 160,962 to 163,334
vgrG
LU632_RS00755: LU632_RS00755 - PAAR domain-containing protein, at 163,458 to 163,727
_RS00755
LU632_RS00760: LU632_RS00760 - TagK domain-containing protein, at 163,790 to 164,569
_RS00760
LU632_RS00765: LU632_RS00765 - ImpE family T6SS protein Cts1E, at 164,588 to 165,385
_RS00765
Position (kb) 163
164 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 162.471 kb on + strand, within vgrG at 162.472 kb on - strand, within vgrG at 162.472 kb on - strand, within vgrG at 162.494 kb on + strand, within vgrG at 162.494 kb on + strand, within vgrG at 162.495 kb on - strand, within vgrG at 162.612 kb on - strand, within vgrG at 162.629 kb on - strand, within vgrG at 162.629 kb on - strand, within vgrG at 162.700 kb on + strand, within vgrG at 162.700 kb on + strand, within vgrG at 162.712 kb on - strand, within vgrG at 162.712 kb on - strand, within vgrG at 162.713 kb on + strand, within vgrG at 162.713 kb on + strand, within vgrG at 162.713 kb on + strand, within vgrG at 162.713 kb on + strand, within vgrG at 162.714 kb on - strand, within vgrG at 162.714 kb on - strand, within vgrG at 162.759 kb on + strand, within vgrG at 162.759 kb on + strand, within vgrG at 162.759 kb on + strand, within vgrG at 162.760 kb on - strand, within vgrG at 162.760 kb on - strand, within vgrG at 162.760 kb on - strand, within vgrG at 162.761 kb on + strand, within vgrG at 162.762 kb on - strand, within vgrG at 162.860 kb on + strand, within vgrG at 162.896 kb on + strand, within vgrG at 162.897 kb on - strand, within vgrG at 162.897 kb on - strand, within vgrG at 163.340 kb on + strand at 163.457 kb on + strand at 163.457 kb on + strand at 163.457 kb on + strand at 163.458 kb on - strand at 163.513 kb on + strand, within LU632_RS00755 at 163.513 kb on + strand, within LU632_RS00755 at 163.514 kb on - strand, within LU632_RS00755 at 163.567 kb on + strand, within LU632_RS00755 at 163.568 kb on - strand, within LU632_RS00755 at 163.630 kb on + strand, within LU632_RS00755 at 163.635 kb on - strand, within LU632_RS00755 at 163.635 kb on - strand, within LU632_RS00755 at 163.722 kb on - strand at 163.843 kb on + strand at 163.844 kb on - strand at 163.844 kb on - strand at 163.853 kb on - strand at 163.878 kb on - strand, within LU632_RS00760 at 163.882 kb on + strand, within LU632_RS00760 at 163.948 kb on + strand, within LU632_RS00760 at 163.948 kb on + strand, within LU632_RS00760 at 164.076 kb on + strand, within LU632_RS00760 at 164.203 kb on - strand, within LU632_RS00760 at 164.424 kb on - strand, within LU632_RS00760 at 164.608 kb on - strand at 164.718 kb on - strand, within LU632_RS00765
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 162,471 + vgrG LU632_RS00750 0.64 -0.1 162,472 - vgrG LU632_RS00750 0.64 +0.1 162,472 - vgrG LU632_RS00750 0.64 +0.5 162,494 + vgrG LU632_RS00750 0.65 -0.4 162,494 + vgrG LU632_RS00750 0.65 +0.8 162,495 - vgrG LU632_RS00750 0.65 -0.5 162,612 - vgrG LU632_RS00750 0.70 -2.0 162,629 - vgrG LU632_RS00750 0.70 +0.8 162,629 - vgrG LU632_RS00750 0.70 -2.9 162,700 + vgrG LU632_RS00750 0.73 +0.9 162,700 + vgrG LU632_RS00750 0.73 -1.1 162,712 - vgrG LU632_RS00750 0.74 -0.8 162,712 - vgrG LU632_RS00750 0.74 +1.1 162,713 + vgrG LU632_RS00750 0.74 +0.7 162,713 + vgrG LU632_RS00750 0.74 +1.6 162,713 + vgrG LU632_RS00750 0.74 +1.0 162,713 + vgrG LU632_RS00750 0.74 -0.2 162,714 - vgrG LU632_RS00750 0.74 -1.2 162,714 - vgrG LU632_RS00750 0.74 -2.2 162,759 + vgrG LU632_RS00750 0.76 -2.6 162,759 + vgrG LU632_RS00750 0.76 -0.8 162,759 + vgrG LU632_RS00750 0.76 -0.2 162,760 - vgrG LU632_RS00750 0.76 +0.9 162,760 - vgrG LU632_RS00750 0.76 +0.8 162,760 - vgrG LU632_RS00750 0.76 -1.4 162,761 + vgrG LU632_RS00750 0.76 +0.4 162,762 - vgrG LU632_RS00750 0.76 +1.4 162,860 + vgrG LU632_RS00750 0.80 -0.2 162,896 + vgrG LU632_RS00750 0.82 -2.0 162,897 - vgrG LU632_RS00750 0.82 +2.6 162,897 - vgrG LU632_RS00750 0.82 -1.8 163,340 + -1.0 163,457 + -2.5 163,457 + -0.4 163,457 + -1.1 163,458 - -1.4 163,513 + LU632_RS00755 0.20 +0.3 163,513 + LU632_RS00755 0.20 -0.1 163,514 - LU632_RS00755 0.21 -2.2 163,567 + LU632_RS00755 0.40 +0.3 163,568 - LU632_RS00755 0.41 -0.8 163,630 + LU632_RS00755 0.64 -1.2 163,635 - LU632_RS00755 0.66 +0.3 163,635 - LU632_RS00755 0.66 +0.1 163,722 - -2.4 163,843 + -0.4 163,844 - +0.4 163,844 - +0.3 163,853 - +0.0 163,878 - LU632_RS00760 0.11 -0.7 163,882 + LU632_RS00760 0.12 +1.1 163,948 + LU632_RS00760 0.20 +0.0 163,948 + LU632_RS00760 0.20 -1.5 164,076 + LU632_RS00760 0.37 +1.6 164,203 - LU632_RS00760 0.53 -2.8 164,424 - LU632_RS00760 0.81 +0.8 164,608 - -1.9 164,718 - LU632_RS00765 0.16 +2.6
Or see this region's nucleotide sequence