Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00620

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00610 and kduD are separated by 42 nucleotideskduD and LU632_RS00620 are separated by 13 nucleotidesLU632_RS00620 and LU632_RS00625 are separated by 22 nucleotides LU632_RS00610: LU632_RS00610 - RpiB/LacA/LacB family sugar-phosphate isomerase, at 125,095 to 125,736 _RS00610 LU632_RS00615: kduD - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 125,779 to 126,540 kduD LU632_RS00620: LU632_RS00620 - glycoside hydrolase family 88 protein, at 126,554 to 127,693 _RS00620 LU632_RS00625: LU632_RS00625 - MFS transporter, at 127,716 to 129,320 _RS00625 Position (kb) 126 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 125.578 kb on - strand, within LU632_RS00610at 125.594 kb on + strand, within LU632_RS00610at 125.595 kb on - strand, within LU632_RS00610at 125.634 kb on + strand, within LU632_RS00610at 125.634 kb on + strand, within LU632_RS00610at 125.635 kb on - strand, within LU632_RS00610at 125.635 kb on - strand, within LU632_RS00610at 125.635 kb on - strand, within LU632_RS00610at 125.639 kb on - strand, within LU632_RS00610at 125.672 kb on - strandat 125.825 kb on - strandat 125.827 kb on - strandat 125.827 kb on - strandat 125.827 kb on - strandat 125.827 kb on - strandat 125.827 kb on - strandat 125.828 kb on + strandat 125.828 kb on + strandat 125.828 kb on + strandat 125.829 kb on - strandat 125.829 kb on - strandat 126.000 kb on + strand, within kduDat 126.000 kb on + strand, within kduDat 126.000 kb on + strand, within kduDat 126.001 kb on - strand, within kduDat 126.005 kb on + strand, within kduDat 126.006 kb on - strand, within kduDat 126.578 kb on + strandat 126.622 kb on + strandat 126.623 kb on - strandat 126.706 kb on + strand, within LU632_RS00620at 126.706 kb on + strand, within LU632_RS00620at 126.706 kb on + strand, within LU632_RS00620at 126.706 kb on + strand, within LU632_RS00620at 126.707 kb on - strand, within LU632_RS00620at 126.707 kb on - strand, within LU632_RS00620at 126.707 kb on - strand, within LU632_RS00620at 126.750 kb on + strand, within LU632_RS00620at 126.750 kb on + strand, within LU632_RS00620at 126.751 kb on - strand, within LU632_RS00620at 126.766 kb on - strand, within LU632_RS00620at 126.829 kb on - strand, within LU632_RS00620at 126.997 kb on + strand, within LU632_RS00620at 126.997 kb on + strand, within LU632_RS00620at 127.085 kb on + strand, within LU632_RS00620at 127.086 kb on - strand, within LU632_RS00620at 127.086 kb on - strand, within LU632_RS00620at 127.113 kb on + strand, within LU632_RS00620at 127.131 kb on + strand, within LU632_RS00620at 127.132 kb on - strand, within LU632_RS00620at 127.132 kb on - strand, within LU632_RS00620at 127.462 kb on - strand, within LU632_RS00620at 127.464 kb on + strand, within LU632_RS00620at 127.470 kb on + strand, within LU632_RS00620at 127.470 kb on + strand, within LU632_RS00620at 127.470 kb on + strand, within LU632_RS00620at 127.470 kb on + strand, within LU632_RS00620at 127.470 kb on + strand, within LU632_RS00620at 127.470 kb on + strand, within LU632_RS00620at 127.471 kb on - strand, within LU632_RS00620at 127.471 kb on - strand, within LU632_RS00620at 127.474 kb on + strand, within LU632_RS00620at 127.475 kb on - strand, within LU632_RS00620at 127.606 kb on + strandat 127.612 kb on + strandat 127.676 kb on + strandat 127.683 kb on + strandat 127.685 kb on + strandat 127.685 kb on + strandat 127.685 kb on + strandat 127.686 kb on - strandat 127.686 kb on - strandat 127.686 kb on - strandat 127.702 kb on - strandat 127.827 kb on - strandat 127.983 kb on - strand, within LU632_RS00625at 127.998 kb on - strand, within LU632_RS00625at 128.055 kb on - strand, within LU632_RS00625at 128.168 kb on + strand, within LU632_RS00625at 128.181 kb on + strand, within LU632_RS00625at 128.227 kb on - strand, within LU632_RS00625at 128.230 kb on + strand, within LU632_RS00625at 128.230 kb on + strand, within LU632_RS00625at 128.230 kb on + strand, within LU632_RS00625at 128.230 kb on + strand, within LU632_RS00625at 128.230 kb on + strand, within LU632_RS00625at 128.230 kb on + strand, within LU632_RS00625at 128.230 kb on + strand, within LU632_RS00625at 128.230 kb on + strand, within LU632_RS00625at 128.231 kb on - strand, within LU632_RS00625at 128.231 kb on - strand, within LU632_RS00625at 128.231 kb on - strand, within LU632_RS00625at 128.231 kb on - strand, within LU632_RS00625at 128.231 kb on - strand, within LU632_RS00625at 128.236 kb on + strand, within LU632_RS00625at 128.237 kb on - strand, within LU632_RS00625at 128.240 kb on + strand, within LU632_RS00625at 128.241 kb on - strand, within LU632_RS00625at 128.254 kb on + strand, within LU632_RS00625at 128.255 kb on - strand, within LU632_RS00625at 128.255 kb on - strand, within LU632_RS00625at 128.255 kb on - strand, within LU632_RS00625at 128.255 kb on - strand, within LU632_RS00625at 128.258 kb on + strand, within LU632_RS00625at 128.258 kb on + strand, within LU632_RS00625at 128.259 kb on - strand, within LU632_RS00625at 128.259 kb on - strand, within LU632_RS00625at 128.259 kb on - strand, within LU632_RS00625at 128.333 kb on - strand, within LU632_RS00625at 128.347 kb on + strand, within LU632_RS00625at 128.347 kb on + strand, within LU632_RS00625at 128.374 kb on - strand, within LU632_RS00625at 128.414 kb on + strand, within LU632_RS00625at 128.415 kb on - strand, within LU632_RS00625at 128.451 kb on + strand, within LU632_RS00625at 128.452 kb on - strand, within LU632_RS00625at 128.452 kb on - strand, within LU632_RS00625at 128.505 kb on + strand, within LU632_RS00625at 128.506 kb on - strand, within LU632_RS00625at 128.511 kb on + strand, within LU632_RS00625at 128.519 kb on - strand, within LU632_RS00625at 128.521 kb on + strand, within LU632_RS00625at 128.521 kb on + strand, within LU632_RS00625at 128.522 kb on - strand, within LU632_RS00625at 128.526 kb on - strand, within LU632_RS00625at 128.556 kb on - strand, within LU632_RS00625at 128.557 kb on + strand, within LU632_RS00625at 128.557 kb on + strand, within LU632_RS00625at 128.557 kb on + strand, within LU632_RS00625at 128.557 kb on + strand, within LU632_RS00625at 128.558 kb on - strand, within LU632_RS00625at 128.558 kb on - strand, within LU632_RS00625at 128.569 kb on + strand, within LU632_RS00625at 128.569 kb on + strand, within LU632_RS00625at 128.570 kb on - strand, within LU632_RS00625at 128.570 kb on - strand, within LU632_RS00625at 128.600 kb on + strand, within LU632_RS00625at 128.600 kb on + strand, within LU632_RS00625at 128.601 kb on - strand, within LU632_RS00625at 128.604 kb on + strand, within LU632_RS00625at 128.604 kb on + strand, within LU632_RS00625at 128.604 kb on + strand, within LU632_RS00625at 128.605 kb on - strand, within LU632_RS00625at 128.605 kb on - strand, within LU632_RS00625at 128.627 kb on + strand, within LU632_RS00625at 128.637 kb on + strand, within LU632_RS00625at 128.637 kb on + strand, within LU632_RS00625at 128.638 kb on - strand, within LU632_RS00625

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
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125,578 - LU632_RS00610 0.75 -1.3
125,594 + LU632_RS00610 0.78 +5.2
125,595 - LU632_RS00610 0.78 -2.4
125,634 + LU632_RS00610 0.84 +1.1
125,634 + LU632_RS00610 0.84 -3.2
125,635 - LU632_RS00610 0.84 +0.3
125,635 - LU632_RS00610 0.84 -0.9
125,635 - LU632_RS00610 0.84 -1.3
125,639 - LU632_RS00610 0.85 -1.7
125,672 - -2.0
125,825 - +1.2
125,827 - -0.7
125,827 - +1.1
125,827 - -0.5
125,827 - -2.8
125,827 - +2.9
125,828 + +1.5
125,828 + -0.1
125,828 + +2.0
125,829 - -0.0
125,829 - +0.3
126,000 + kduD LU632_RS00615 0.29 -2.0
126,000 + kduD LU632_RS00615 0.29 -0.1
126,000 + kduD LU632_RS00615 0.29 +2.1
126,001 - kduD LU632_RS00615 0.29 +0.3
126,005 + kduD LU632_RS00615 0.30 -2.0
126,006 - kduD LU632_RS00615 0.30 +0.1
126,578 + -0.2
126,622 + -0.6
126,623 - -1.2
126,706 + LU632_RS00620 0.13 -1.2
126,706 + LU632_RS00620 0.13 +0.8
126,706 + LU632_RS00620 0.13 +0.4
126,706 + LU632_RS00620 0.13 -0.7
126,707 - LU632_RS00620 0.13 +1.2
126,707 - LU632_RS00620 0.13 +0.1
126,707 - LU632_RS00620 0.13 +1.8
126,750 + LU632_RS00620 0.17 +0.5
126,750 + LU632_RS00620 0.17 -2.0
126,751 - LU632_RS00620 0.17 -0.9
126,766 - LU632_RS00620 0.19 +0.4
126,829 - LU632_RS00620 0.24 +0.7
126,997 + LU632_RS00620 0.39 +4.5
126,997 + LU632_RS00620 0.39 -2.7
127,085 + LU632_RS00620 0.47 +1.5
127,086 - LU632_RS00620 0.47 -2.3
127,086 - LU632_RS00620 0.47 -1.1
127,113 + LU632_RS00620 0.49 -0.7
127,131 + LU632_RS00620 0.51 +0.2
127,132 - LU632_RS00620 0.51 +0.8
127,132 - LU632_RS00620 0.51 +0.8
127,462 - LU632_RS00620 0.80 -3.1
127,464 + LU632_RS00620 0.80 +2.8
127,470 + LU632_RS00620 0.80 -1.4
127,470 + LU632_RS00620 0.80 -1.7
127,470 + LU632_RS00620 0.80 +0.8
127,470 + LU632_RS00620 0.80 -0.7
127,470 + LU632_RS00620 0.80 -1.0
127,470 + LU632_RS00620 0.80 -0.4
127,471 - LU632_RS00620 0.80 -1.2
127,471 - LU632_RS00620 0.80 +0.6
127,474 + LU632_RS00620 0.81 -0.3
127,475 - LU632_RS00620 0.81 -1.3
127,606 + -0.2
127,612 + +2.1
127,676 + +1.0
127,683 + +2.9
127,685 + -0.8
127,685 + +0.8
127,685 + +0.2
127,686 - -1.7
127,686 - +0.7
127,686 - +1.4
127,702 - -2.2
127,827 - -2.3
127,983 - LU632_RS00625 0.17 +1.6
127,998 - LU632_RS00625 0.18 +0.8
128,055 - LU632_RS00625 0.21 +0.0
128,168 + LU632_RS00625 0.28 +0.5
128,181 + LU632_RS00625 0.29 -1.8
128,227 - LU632_RS00625 0.32 +0.7
128,230 + LU632_RS00625 0.32 -0.3
128,230 + LU632_RS00625 0.32 +0.1
128,230 + LU632_RS00625 0.32 +1.2
128,230 + LU632_RS00625 0.32 +1.7
128,230 + LU632_RS00625 0.32 -2.3
128,230 + LU632_RS00625 0.32 +0.5
128,230 + LU632_RS00625 0.32 -0.3
128,230 + LU632_RS00625 0.32 +0.1
128,231 - LU632_RS00625 0.32 -0.6
128,231 - LU632_RS00625 0.32 +0.6
128,231 - LU632_RS00625 0.32 +0.8
128,231 - LU632_RS00625 0.32 +0.8
128,231 - LU632_RS00625 0.32 +2.1
128,236 + LU632_RS00625 0.32 +1.7
128,237 - LU632_RS00625 0.32 -1.5
128,240 + LU632_RS00625 0.33 -0.5
128,241 - LU632_RS00625 0.33 +0.4
128,254 + LU632_RS00625 0.34 +0.7
128,255 - LU632_RS00625 0.34 -0.2
128,255 - LU632_RS00625 0.34 +1.6
128,255 - LU632_RS00625 0.34 +0.0
128,255 - LU632_RS00625 0.34 -0.7
128,258 + LU632_RS00625 0.34 -2.0
128,258 + LU632_RS00625 0.34 -2.2
128,259 - LU632_RS00625 0.34 +0.1
128,259 - LU632_RS00625 0.34 -1.0
128,259 - LU632_RS00625 0.34 -0.4
128,333 - LU632_RS00625 0.38 -0.2
128,347 + LU632_RS00625 0.39 -2.2
128,347 + LU632_RS00625 0.39 +2.0
128,374 - LU632_RS00625 0.41 -0.0
128,414 + LU632_RS00625 0.43 -1.2
128,415 - LU632_RS00625 0.44 -0.7
128,451 + LU632_RS00625 0.46 +0.4
128,452 - LU632_RS00625 0.46 -0.7
128,452 - LU632_RS00625 0.46 -0.3
128,505 + LU632_RS00625 0.49 +0.2
128,506 - LU632_RS00625 0.49 -1.7
128,511 + LU632_RS00625 0.50 +3.7
128,519 - LU632_RS00625 0.50 +0.0
128,521 + LU632_RS00625 0.50 +1.1
128,521 + LU632_RS00625 0.50 -1.2
128,522 - LU632_RS00625 0.50 +1.9
128,526 - LU632_RS00625 0.50 +0.3
128,556 - LU632_RS00625 0.52 +1.8
128,557 + LU632_RS00625 0.52 -1.7
128,557 + LU632_RS00625 0.52 -2.5
128,557 + LU632_RS00625 0.52 -2.2
128,557 + LU632_RS00625 0.52 +0.4
128,558 - LU632_RS00625 0.52 -0.7
128,558 - LU632_RS00625 0.52 +0.5
128,569 + LU632_RS00625 0.53 +1.0
128,569 + LU632_RS00625 0.53 -2.5
128,570 - LU632_RS00625 0.53 -0.7
128,570 - LU632_RS00625 0.53 +0.4
128,600 + LU632_RS00625 0.55 -0.2
128,600 + LU632_RS00625 0.55 +0.3
128,601 - LU632_RS00625 0.55 +0.6
128,604 + LU632_RS00625 0.55 +0.2
128,604 + LU632_RS00625 0.55 +1.5
128,604 + LU632_RS00625 0.55 -2.0
128,605 - LU632_RS00625 0.55 +0.8
128,605 - LU632_RS00625 0.55 +0.8
128,627 + LU632_RS00625 0.57 +1.7
128,637 + LU632_RS00625 0.57 +0.8
128,637 + LU632_RS00625 0.57 -0.2
128,638 - LU632_RS00625 0.57 -0.8

Or see this region's nucleotide sequence