Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00375 and LU632_RS00380 are separated by 508 nucleotides LU632_RS00380 and LU632_RS00385 are separated by 185 nucleotides LU632_RS00385 and LU632_RS00390 are separated by 154 nucleotides
LU632_RS00375: LU632_RS00375 - ISNCY family transposase, at 78,251 to 79,035
_RS00375
LU632_RS00380: LU632_RS00380 - DUF4225 domain-containing protein, at 79,544 to 80,347
_RS00380
LU632_RS00385: LU632_RS00385 - DDE-type integrase/transposase/recombinase, at 80,533 to 80,849
_RS00385
LU632_RS00390: LU632_RS00390 - sugar kinase, at 81,004 to 81,936
_RS00390
Position (kb) 79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 78.554 kb on - strand, within LU632_RS00375 at 78.554 kb on - strand, within LU632_RS00375 at 78.556 kb on - strand, within LU632_RS00375 at 78.673 kb on + strand, within LU632_RS00375 at 78.746 kb on - strand, within LU632_RS00375 at 78.746 kb on - strand, within LU632_RS00375 at 78.796 kb on + strand, within LU632_RS00375 at 78.799 kb on - strand, within LU632_RS00375 at 78.901 kb on + strand, within LU632_RS00375 at 78.978 kb on + strand at 79.019 kb on - strand at 79.026 kb on + strand at 79.130 kb on + strand at 79.301 kb on + strand at 79.439 kb on + strand at 79.545 kb on + strand at 79.575 kb on - strand at 79.641 kb on - strand, within LU632_RS00380 at 79.851 kb on - strand, within LU632_RS00380 at 79.921 kb on + strand, within LU632_RS00380 at 79.921 kb on + strand, within LU632_RS00380 at 79.944 kb on - strand, within LU632_RS00380 at 80.159 kb on + strand, within LU632_RS00380 at 80.160 kb on - strand, within LU632_RS00380 at 80.192 kb on + strand, within LU632_RS00380 at 80.252 kb on - strand, within LU632_RS00380 at 80.279 kb on + strand at 80.326 kb on + strand at 80.326 kb on + strand at 80.327 kb on - strand at 80.441 kb on + strand at 80.441 kb on + strand at 80.442 kb on - strand at 80.442 kb on - strand at 80.442 kb on - strand at 80.442 kb on - strand at 80.487 kb on - strand at 80.487 kb on - strand at 80.491 kb on - strand at 80.583 kb on + strand, within LU632_RS00385 at 80.905 kb on + strand at 80.906 kb on - strand at 80.906 kb on - strand at 80.921 kb on + strand at 81.031 kb on - strand at 81.125 kb on + strand, within LU632_RS00390 at 81.136 kb on - strand, within LU632_RS00390 at 81.159 kb on + strand, within LU632_RS00390
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 78,554 - LU632_RS00375 0.39 -0.2 78,554 - LU632_RS00375 0.39 +0.8 78,556 - LU632_RS00375 0.39 +0.5 78,673 + LU632_RS00375 0.54 -0.8 78,746 - LU632_RS00375 0.63 +0.6 78,746 - LU632_RS00375 0.63 +1.8 78,796 + LU632_RS00375 0.69 -2.3 78,799 - LU632_RS00375 0.70 +0.1 78,901 + LU632_RS00375 0.83 -1.8 78,978 + -1.1 79,019 - -0.5 79,026 + -1.5 79,130 + -0.8 79,301 + -1.0 79,439 + +0.5 79,545 + +0.9 79,575 - -0.1 79,641 - LU632_RS00380 0.12 +0.4 79,851 - LU632_RS00380 0.38 +1.2 79,921 + LU632_RS00380 0.47 -0.1 79,921 + LU632_RS00380 0.47 +1.1 79,944 - LU632_RS00380 0.50 +0.3 80,159 + LU632_RS00380 0.76 +0.2 80,160 - LU632_RS00380 0.77 -2.0 80,192 + LU632_RS00380 0.81 +0.6 80,252 - LU632_RS00380 0.88 -0.4 80,279 + +0.6 80,326 + -0.5 80,326 + -0.2 80,327 - +0.8 80,441 + +0.6 80,441 + -2.9 80,442 - -3.6 80,442 - +0.6 80,442 - -1.5 80,442 - -0.2 80,487 - +1.5 80,487 - -2.2 80,491 - -1.0 80,583 + LU632_RS00385 0.16 +2.5 80,905 + +1.5 80,906 - +0.6 80,906 - -2.6 80,921 + +0.6 81,031 - -3.4 81,125 + LU632_RS00390 0.13 -0.8 81,136 - LU632_RS00390 0.14 +0.4 81,159 + LU632_RS00390 0.17 -1.0
Or see this region's nucleotide sequence