Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00290 and LU632_RS00295 are separated by 31 nucleotides LU632_RS00295 and LU632_RS00300 are separated by 218 nucleotides LU632_RS00300 and LU632_RS00305 are separated by 156 nucleotides
LU632_RS00290: LU632_RS00290 - hypothetical protein, at 58,592 to 59,620
_RS00290
LU632_RS00295: LU632_RS00295 - IS1 family transposase, at 59,652 to 60,349
_RS00295
LU632_RS00300: LU632_RS00300 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 60,568 to 61,599
_RS00300
LU632_RS00305: LU632_RS00305 - glycosyl hydrolase family 8, at 61,756 to 62,675
_RS00305
Position (kb) 60
61
62 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 59.570 kb on - strand at 59.582 kb on - strand at 60.380 kb on + strand at 60.381 kb on - strand at 60.383 kb on + strand at 60.383 kb on + strand at 60.384 kb on - strand at 60.387 kb on + strand at 60.405 kb on - strand at 60.428 kb on + strand at 60.428 kb on + strand at 60.428 kb on + strand at 60.432 kb on - strand at 60.432 kb on - strand at 60.470 kb on - strand at 60.470 kb on - strand at 60.499 kb on - strand at 60.519 kb on - strand at 60.735 kb on - strand, within LU632_RS00300 at 60.735 kb on - strand, within LU632_RS00300 at 60.735 kb on - strand, within LU632_RS00300 at 60.748 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.890 kb on - strand, within LU632_RS00300 at 60.918 kb on + strand, within LU632_RS00300 at 60.918 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.026 kb on - strand, within LU632_RS00300 at 61.181 kb on + strand, within LU632_RS00300 at 61.181 kb on + strand, within LU632_RS00300 at 61.181 kb on + strand, within LU632_RS00300 at 61.183 kb on + strand, within LU632_RS00300 at 61.184 kb on - strand, within LU632_RS00300 at 61.243 kb on - strand, within LU632_RS00300 at 61.274 kb on + strand, within LU632_RS00300 at 61.275 kb on - strand, within LU632_RS00300 at 61.277 kb on - strand, within LU632_RS00300 at 61.284 kb on + strand, within LU632_RS00300 at 61.387 kb on + strand, within LU632_RS00300 at 61.406 kb on + strand, within LU632_RS00300 at 61.427 kb on - strand, within LU632_RS00300 at 61.430 kb on - strand, within LU632_RS00300 at 61.430 kb on - strand, within LU632_RS00300 at 61.557 kb on + strand at 61.727 kb on + strand at 61.727 kb on + strand at 61.728 kb on - strand at 61.728 kb on - strand at 61.854 kb on + strand, within LU632_RS00305 at 61.854 kb on + strand, within LU632_RS00305 at 61.855 kb on - strand, within LU632_RS00305 at 61.857 kb on + strand, within LU632_RS00305 at 61.858 kb on - strand, within LU632_RS00305 at 61.859 kb on + strand, within LU632_RS00305 at 61.860 kb on - strand, within LU632_RS00305 at 61.860 kb on - strand, within LU632_RS00305 at 61.860 kb on - strand, within LU632_RS00305 at 61.860 kb on - strand, within LU632_RS00305 at 61.909 kb on - strand, within LU632_RS00305 at 61.956 kb on - strand, within LU632_RS00305 at 62.071 kb on - strand, within LU632_RS00305 at 62.077 kb on + strand, within LU632_RS00305 at 62.145 kb on - strand, within LU632_RS00305 at 62.145 kb on - strand, within LU632_RS00305 at 62.155 kb on + strand, within LU632_RS00305 at 62.188 kb on - strand, within LU632_RS00305 at 62.188 kb on - strand, within LU632_RS00305 at 62.188 kb on - strand, within LU632_RS00305 at 62.392 kb on + strand, within LU632_RS00305 at 62.392 kb on + strand, within LU632_RS00305 at 62.393 kb on - strand, within LU632_RS00305 at 62.416 kb on + strand, within LU632_RS00305 at 62.482 kb on + strand, within LU632_RS00305 at 62.491 kb on - strand, within LU632_RS00305 at 62.523 kb on - strand, within LU632_RS00305 at 62.523 kb on - strand, within LU632_RS00305 at 62.525 kb on + strand, within LU632_RS00305 at 62.526 kb on - strand, within LU632_RS00305 at 62.537 kb on + strand, within LU632_RS00305 at 62.537 kb on + strand, within LU632_RS00305 at 62.537 kb on + strand, within LU632_RS00305 at 62.537 kb on + strand, within LU632_RS00305 at 62.537 kb on + strand, within LU632_RS00305 at 62.538 kb on - strand, within LU632_RS00305 at 62.538 kb on - strand, within LU632_RS00305 at 62.538 kb on - strand, within LU632_RS00305 at 62.538 kb on - strand, within LU632_RS00305 at 62.538 kb on - strand, within LU632_RS00305
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 59,570 - +0.7 59,582 - +0.8 60,380 + +0.5 60,381 - -0.2 60,383 + +2.2 60,383 + -1.5 60,384 - +0.1 60,387 + -0.3 60,405 - +0.8 60,428 + -0.2 60,428 + +0.4 60,428 + -0.2 60,432 - +0.9 60,432 - -0.2 60,470 - +1.4 60,470 - +6.3 60,499 - +0.3 60,519 - +1.4 60,735 - LU632_RS00300 0.16 -1.2 60,735 - LU632_RS00300 0.16 +1.8 60,735 - LU632_RS00300 0.16 -0.7 60,748 + LU632_RS00300 0.17 -0.7 60,889 + LU632_RS00300 0.31 +1.0 60,889 + LU632_RS00300 0.31 -0.7 60,889 + LU632_RS00300 0.31 +0.3 60,889 + LU632_RS00300 0.31 +0.6 60,889 + LU632_RS00300 0.31 +0.6 60,890 - LU632_RS00300 0.31 -1.2 60,918 + LU632_RS00300 0.34 -0.9 60,918 + LU632_RS00300 0.34 +0.1 61,025 + LU632_RS00300 0.44 -0.3 61,025 + LU632_RS00300 0.44 +0.6 61,025 + LU632_RS00300 0.44 -3.9 61,025 + LU632_RS00300 0.44 +0.9 61,025 + LU632_RS00300 0.44 -0.8 61,026 - LU632_RS00300 0.44 +0.2 61,181 + LU632_RS00300 0.59 -1.5 61,181 + LU632_RS00300 0.59 -0.8 61,181 + LU632_RS00300 0.59 -1.2 61,183 + LU632_RS00300 0.60 +0.7 61,184 - LU632_RS00300 0.60 +1.9 61,243 - LU632_RS00300 0.65 -1.3 61,274 + LU632_RS00300 0.68 +2.2 61,275 - LU632_RS00300 0.69 +0.8 61,277 - LU632_RS00300 0.69 -3.7 61,284 + LU632_RS00300 0.69 -1.5 61,387 + LU632_RS00300 0.79 -1.5 61,406 + LU632_RS00300 0.81 +0.0 61,427 - LU632_RS00300 0.83 +1.8 61,430 - LU632_RS00300 0.84 +0.6 61,430 - LU632_RS00300 0.84 +1.3 61,557 + -4.3 61,727 + +2.0 61,727 + +0.8 61,728 - -1.9 61,728 - -0.4 61,854 + LU632_RS00305 0.11 -0.2 61,854 + LU632_RS00305 0.11 -0.7 61,855 - LU632_RS00305 0.11 -0.1 61,857 + LU632_RS00305 0.11 +2.0 61,858 - LU632_RS00305 0.11 +0.9 61,859 + LU632_RS00305 0.11 +1.3 61,860 - LU632_RS00305 0.11 +0.5 61,860 - LU632_RS00305 0.11 -0.2 61,860 - LU632_RS00305 0.11 +0.3 61,860 - LU632_RS00305 0.11 -1.5 61,909 - LU632_RS00305 0.17 +2.1 61,956 - LU632_RS00305 0.22 +1.1 62,071 - LU632_RS00305 0.34 +1.1 62,077 + LU632_RS00305 0.35 -3.1 62,145 - LU632_RS00305 0.42 +0.1 62,145 - LU632_RS00305 0.42 +0.2 62,155 + LU632_RS00305 0.43 -1.2 62,188 - LU632_RS00305 0.47 +2.1 62,188 - LU632_RS00305 0.47 -0.2 62,188 - LU632_RS00305 0.47 +2.7 62,392 + LU632_RS00305 0.69 -0.2 62,392 + LU632_RS00305 0.69 +0.6 62,393 - LU632_RS00305 0.69 -0.6 62,416 + LU632_RS00305 0.72 -1.5 62,482 + LU632_RS00305 0.79 -2.3 62,491 - LU632_RS00305 0.80 -0.5 62,523 - LU632_RS00305 0.83 +2.8 62,523 - LU632_RS00305 0.83 +0.7 62,525 + LU632_RS00305 0.84 -1.5 62,526 - LU632_RS00305 0.84 +0.4 62,537 + LU632_RS00305 0.85 +0.3 62,537 + LU632_RS00305 0.85 -0.2 62,537 + LU632_RS00305 0.85 +0.5 62,537 + LU632_RS00305 0.85 -1.7 62,537 + LU632_RS00305 0.85 +0.8 62,538 - LU632_RS00305 0.85 -1.0 62,538 - LU632_RS00305 0.85 -1.2 62,538 - LU632_RS00305 0.85 -0.1 62,538 - LU632_RS00305 0.85 -0.7 62,538 - LU632_RS00305 0.85 +0.8
Or see this region's nucleotide sequence