Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dppC and dppD are separated by 9 nucleotides dppD and LU632_RS00285 overlap by 29 nucleotides LU632_RS00285 and LU632_RS00290 are separated by 144 nucleotides
LU632_RS00275: dppC - dipeptide ABC transporter permease DppC, at 55,558 to 56,460
dppC
LU632_RS00280: dppD - dipeptide ABC transporter ATP-binding protein, at 56,470 to 57,456
dppD
LU632_RS00285: LU632_RS00285 - ABC transporter ATP-binding protein, at 57,428 to 58,447
_RS00285
LU632_RS00290: LU632_RS00290 - hypothetical protein, at 58,592 to 59,620
_RS00290
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.480 kb on + strand at 56.551 kb on + strand at 56.638 kb on - strand, within dppD at 56.645 kb on - strand, within dppD at 56.653 kb on - strand, within dppD at 56.786 kb on - strand, within dppD at 57.046 kb on - strand, within dppD at 57.046 kb on - strand, within dppD at 57.047 kb on + strand, within dppD at 57.048 kb on - strand, within dppD at 57.065 kb on + strand, within dppD at 57.065 kb on + strand, within dppD at 57.065 kb on + strand, within dppD at 57.066 kb on - strand, within dppD at 57.066 kb on - strand, within dppD at 57.151 kb on + strand, within dppD at 57.151 kb on + strand, within dppD at 57.152 kb on - strand, within dppD at 57.152 kb on - strand, within dppD at 57.214 kb on + strand, within dppD at 57.216 kb on + strand, within dppD at 57.380 kb on + strand at 57.380 kb on + strand at 57.547 kb on - strand, within LU632_RS00285 at 57.684 kb on - strand, within LU632_RS00285 at 58.085 kb on + strand, within LU632_RS00285 at 58.085 kb on + strand, within LU632_RS00285 at 58.094 kb on - strand, within LU632_RS00285 at 58.148 kb on + strand, within LU632_RS00285 at 58.148 kb on + strand, within LU632_RS00285 at 58.148 kb on + strand, within LU632_RS00285 at 58.149 kb on - strand, within LU632_RS00285 at 58.149 kb on - strand, within LU632_RS00285 at 58.149 kb on - strand, within LU632_RS00285 at 58.149 kb on - strand, within LU632_RS00285 at 58.327 kb on + strand, within LU632_RS00285 at 58.388 kb on + strand at 58.534 kb on + strand at 58.534 kb on + strand at 58.535 kb on - strand at 58.535 kb on - strand at 58.536 kb on + strand at 58.553 kb on + strand at 59.002 kb on - strand, within LU632_RS00290 at 59.131 kb on - strand, within LU632_RS00290 at 59.160 kb on + strand, within LU632_RS00290 at 59.166 kb on - strand, within LU632_RS00290 at 59.250 kb on - strand, within LU632_RS00290 at 59.293 kb on + strand, within LU632_RS00290 at 59.356 kb on - strand, within LU632_RS00290
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 56,480 + -2.0 56,551 + +2.7 56,638 - dppD LU632_RS00280 0.17 -0.8 56,645 - dppD LU632_RS00280 0.18 +1.2 56,653 - dppD LU632_RS00280 0.19 +1.8 56,786 - dppD LU632_RS00280 0.32 -2.2 57,046 - dppD LU632_RS00280 0.58 -0.7 57,046 - dppD LU632_RS00280 0.58 +0.8 57,047 + dppD LU632_RS00280 0.58 -2.7 57,048 - dppD LU632_RS00280 0.59 +2.7 57,065 + dppD LU632_RS00280 0.60 -1.5 57,065 + dppD LU632_RS00280 0.60 -0.9 57,065 + dppD LU632_RS00280 0.60 -0.1 57,066 - dppD LU632_RS00280 0.60 -0.7 57,066 - dppD LU632_RS00280 0.60 -2.9 57,151 + dppD LU632_RS00280 0.69 +1.0 57,151 + dppD LU632_RS00280 0.69 +0.3 57,152 - dppD LU632_RS00280 0.69 -1.5 57,152 - dppD LU632_RS00280 0.69 -1.0 57,214 + dppD LU632_RS00280 0.75 +0.2 57,216 + dppD LU632_RS00280 0.76 +0.4 57,380 + +1.1 57,380 + -1.0 57,547 - LU632_RS00285 0.12 -0.7 57,684 - LU632_RS00285 0.25 +0.4 58,085 + LU632_RS00285 0.64 +0.8 58,085 + LU632_RS00285 0.64 -1.4 58,094 - LU632_RS00285 0.65 -3.6 58,148 + LU632_RS00285 0.71 -0.5 58,148 + LU632_RS00285 0.71 +1.1 58,148 + LU632_RS00285 0.71 -2.5 58,149 - LU632_RS00285 0.71 +1.0 58,149 - LU632_RS00285 0.71 -3.0 58,149 - LU632_RS00285 0.71 -0.3 58,149 - LU632_RS00285 0.71 -0.3 58,327 + LU632_RS00285 0.88 -0.9 58,388 + +2.4 58,534 + +1.2 58,534 + -0.1 58,535 - -1.7 58,535 - -0.3 58,536 + +1.9 58,553 + -0.6 59,002 - LU632_RS00290 0.40 +1.4 59,131 - LU632_RS00290 0.52 -2.0 59,160 + LU632_RS00290 0.55 -1.1 59,166 - LU632_RS00290 0.56 -1.3 59,250 - LU632_RS00290 0.64 -2.3 59,293 + LU632_RS00290 0.68 -1.2 59,356 - LU632_RS00290 0.74 -0.8
Or see this region's nucleotide sequence