Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00170 and LU632_RS00175 are separated by 89 nucleotides LU632_RS00175 and LU632_RS00180 are separated by 357 nucleotides LU632_RS00180 and glyS are separated by 593 nucleotides
LU632_RS00170: LU632_RS00170 - hypothetical protein, at 32,060 to 32,641
_RS00170
LU632_RS00175: LU632_RS00175 - IS6 family transposase, at 32,731 to 33,212
_RS00175
LU632_RS00180: LU632_RS00180 - DUF3053 domain-containing protein, at 33,570 to 34,286
_RS00180
LU632_RS00185: glyS - glycine--tRNA ligase subunit beta, at 34,880 to 36,949
glyS
Position (kb) 33
34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 32.575 kb on + strand, within LU632_RS00170 at 32.587 kb on + strand at 32.597 kb on - strand at 32.598 kb on + strand at 32.598 kb on + strand at 32.598 kb on + strand at 32.598 kb on + strand at 32.598 kb on + strand at 32.599 kb on - strand at 32.599 kb on - strand at 32.599 kb on - strand at 32.599 kb on - strand at 32.599 kb on - strand at 32.599 kb on - strand at 32.603 kb on - strand at 32.621 kb on + strand at 33.300 kb on + strand at 33.301 kb on - strand at 33.332 kb on + strand at 33.365 kb on + strand at 33.394 kb on + strand at 33.402 kb on - strand at 33.568 kb on + strand at 33.569 kb on - strand at 33.571 kb on + strand at 33.571 kb on + strand at 33.647 kb on + strand, within LU632_RS00180 at 33.647 kb on + strand, within LU632_RS00180 at 33.652 kb on + strand, within LU632_RS00180 at 33.653 kb on - strand, within LU632_RS00180 at 33.698 kb on + strand, within LU632_RS00180 at 33.699 kb on - strand, within LU632_RS00180 at 33.705 kb on + strand, within LU632_RS00180 at 33.745 kb on - strand, within LU632_RS00180 at 33.822 kb on - strand, within LU632_RS00180 at 33.824 kb on - strand, within LU632_RS00180 at 33.971 kb on - strand, within LU632_RS00180 at 33.996 kb on + strand, within LU632_RS00180 at 33.997 kb on - strand, within LU632_RS00180 at 34.060 kb on + strand, within LU632_RS00180 at 34.072 kb on + strand, within LU632_RS00180 at 34.073 kb on - strand, within LU632_RS00180 at 34.084 kb on + strand, within LU632_RS00180 at 34.152 kb on - strand, within LU632_RS00180 at 34.293 kb on + strand at 34.324 kb on + strand at 34.324 kb on + strand at 34.326 kb on + strand at 34.355 kb on - strand at 34.407 kb on + strand at 34.410 kb on + strand at 34.410 kb on + strand at 34.411 kb on - strand at 34.411 kb on - strand at 34.411 kb on - strand at 34.472 kb on - strand at 34.485 kb on - strand at 34.604 kb on + strand at 34.672 kb on + strand at 34.673 kb on - strand at 34.677 kb on - strand at 34.696 kb on - strand at 34.696 kb on - strand at 34.720 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 32,575 + LU632_RS00170 0.88 -0.2 32,587 + +0.0 32,597 - +0.2 32,598 + -1.7 32,598 + -0.4 32,598 + -2.3 32,598 + -2.4 32,598 + -1.7 32,599 - -0.6 32,599 - -2.5 32,599 - +1.5 32,599 - -3.1 32,599 - +0.2 32,599 - -0.7 32,603 - +1.8 32,621 + -1.3 33,300 + -0.2 33,301 - +0.1 33,332 + -1.8 33,365 + +0.8 33,394 + -0.2 33,402 - +0.8 33,568 + +0.3 33,569 - -1.0 33,571 + -0.2 33,571 + +0.8 33,647 + LU632_RS00180 0.11 +0.5 33,647 + LU632_RS00180 0.11 -3.1 33,652 + LU632_RS00180 0.11 +3.4 33,653 - LU632_RS00180 0.12 +0.7 33,698 + LU632_RS00180 0.18 +2.3 33,699 - LU632_RS00180 0.18 +0.5 33,705 + LU632_RS00180 0.19 +1.8 33,745 - LU632_RS00180 0.24 -0.3 33,822 - LU632_RS00180 0.35 -2.6 33,824 - LU632_RS00180 0.35 +0.9 33,971 - LU632_RS00180 0.56 +1.3 33,996 + LU632_RS00180 0.59 +2.0 33,997 - LU632_RS00180 0.60 -0.7 34,060 + LU632_RS00180 0.68 -1.2 34,072 + LU632_RS00180 0.70 -0.4 34,073 - LU632_RS00180 0.70 -0.2 34,084 + LU632_RS00180 0.72 -0.6 34,152 - LU632_RS00180 0.81 +0.5 34,293 + -0.7 34,324 + +0.8 34,324 + +0.3 34,326 + -1.4 34,355 - +0.5 34,407 + -0.2 34,410 + -0.7 34,410 + -1.2 34,411 - +0.2 34,411 - -1.4 34,411 - -0.8 34,472 - -2.7 34,485 - -0.5 34,604 + +0.0 34,672 + +0.3 34,673 - -0.6 34,677 - +0.6 34,696 - -0.7 34,696 - +0.4 34,720 + -0.2
Or see this region's nucleotide sequence