Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS09035 and HMPREF1181_RS09040 are separated by 70 nucleotides HMPREF1181_RS09040 and HMPREF1181_RS09045 are separated by 26 nucleotides
HMPREF1181_RS09035: HMPREF1181_RS09035 - NADH-quinone oxidoreductase subunit L, at 407,287 to 409,200
_RS09035
HMPREF1181_RS09040: HMPREF1181_RS09040 - NADH-quinone oxidoreductase subunit M, at 409,271 to 410,758
_RS09040
HMPREF1181_RS09045: HMPREF1181_RS09045 - NADH-quinone oxidoreductase subunit N, at 410,785 to 412,224
_RS09045
Position (kb) 409
410
411 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 408.313 kb on + strand, within HMPREF1181_RS09035 at 408.316 kb on - strand, within HMPREF1181_RS09035 at 408.439 kb on + strand, within HMPREF1181_RS09035 at 408.530 kb on + strand, within HMPREF1181_RS09035 at 408.607 kb on - strand, within HMPREF1181_RS09035 at 408.619 kb on + strand, within HMPREF1181_RS09035 at 408.750 kb on + strand, within HMPREF1181_RS09035 at 408.756 kb on - strand, within HMPREF1181_RS09035 at 408.808 kb on + strand, within HMPREF1181_RS09035 at 408.811 kb on - strand, within HMPREF1181_RS09035 at 408.890 kb on - strand, within HMPREF1181_RS09035 at 408.892 kb on - strand, within HMPREF1181_RS09035 at 408.959 kb on - strand, within HMPREF1181_RS09035 at 409.144 kb on + strand at 409.144 kb on + strand at 409.181 kb on + strand at 409.181 kb on + strand at 409.227 kb on + strand at 409.227 kb on + strand at 409.227 kb on + strand at 409.238 kb on + strand at 409.239 kb on - strand at 409.254 kb on - strand at 409.254 kb on - strand at 409.254 kb on - strand at 409.261 kb on + strand at 409.264 kb on + strand at 409.287 kb on + strand at 409.350 kb on + strand at 409.350 kb on + strand at 409.351 kb on - strand at 409.470 kb on + strand, within HMPREF1181_RS09040 at 409.655 kb on - strand, within HMPREF1181_RS09040 at 409.688 kb on + strand, within HMPREF1181_RS09040 at 409.823 kb on + strand, within HMPREF1181_RS09040 at 409.823 kb on + strand, within HMPREF1181_RS09040 at 409.824 kb on - strand, within HMPREF1181_RS09040 at 409.880 kb on - strand, within HMPREF1181_RS09040 at 410.175 kb on - strand, within HMPREF1181_RS09040 at 410.187 kb on - strand, within HMPREF1181_RS09040 at 410.323 kb on - strand, within HMPREF1181_RS09040 at 410.325 kb on - strand, within HMPREF1181_RS09040 at 410.527 kb on + strand, within HMPREF1181_RS09040 at 410.528 kb on - strand, within HMPREF1181_RS09040 at 410.528 kb on - strand, within HMPREF1181_RS09040 at 410.553 kb on - strand, within HMPREF1181_RS09040 at 410.553 kb on - strand, within HMPREF1181_RS09040 at 410.553 kb on - strand, within HMPREF1181_RS09040 at 410.649 kb on + strand at 410.743 kb on - strand at 410.743 kb on - strand at 410.792 kb on - strand at 410.792 kb on - strand at 410.804 kb on + strand at 410.804 kb on + strand at 410.952 kb on + strand, within HMPREF1181_RS09045 at 410.953 kb on - strand, within HMPREF1181_RS09045 at 410.954 kb on + strand, within HMPREF1181_RS09045 at 410.955 kb on - strand, within HMPREF1181_RS09045 at 410.999 kb on - strand, within HMPREF1181_RS09045 at 411.125 kb on + strand, within HMPREF1181_RS09045 at 411.150 kb on + strand, within HMPREF1181_RS09045 at 411.151 kb on - strand, within HMPREF1181_RS09045 at 411.154 kb on + strand, within HMPREF1181_RS09045 at 411.154 kb on + strand, within HMPREF1181_RS09045 at 411.155 kb on - strand, within HMPREF1181_RS09045 at 411.155 kb on - strand, within HMPREF1181_RS09045 at 411.247 kb on + strand, within HMPREF1181_RS09045 at 411.280 kb on + strand, within HMPREF1181_RS09045 at 411.337 kb on + strand, within HMPREF1181_RS09045 at 411.338 kb on - strand, within HMPREF1181_RS09045 at 411.338 kb on - strand, within HMPREF1181_RS09045 at 411.405 kb on + strand, within HMPREF1181_RS09045 at 411.483 kb on - strand, within HMPREF1181_RS09045 at 411.754 kb on - strand, within HMPREF1181_RS09045
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 408,313 + HMPREF1181_RS09035 0.54 -0.3 408,316 - HMPREF1181_RS09035 0.54 -0.4 408,439 + HMPREF1181_RS09035 0.60 -0.3 408,530 + HMPREF1181_RS09035 0.65 +0.2 408,607 - HMPREF1181_RS09035 0.69 +1.3 408,619 + HMPREF1181_RS09035 0.70 -0.6 408,750 + HMPREF1181_RS09035 0.76 -0.8 408,756 - HMPREF1181_RS09035 0.77 -1.3 408,808 + HMPREF1181_RS09035 0.79 -1.1 408,811 - HMPREF1181_RS09035 0.80 +0.8 408,890 - HMPREF1181_RS09035 0.84 +1.3 408,892 - HMPREF1181_RS09035 0.84 +0.8 408,959 - HMPREF1181_RS09035 0.87 -0.3 409,144 + +0.6 409,144 + +0.7 409,181 + -2.9 409,181 + +0.0 409,227 + -0.6 409,227 + -0.5 409,227 + -1.0 409,238 + +0.0 409,239 - +1.0 409,254 - +1.2 409,254 - +1.7 409,254 - +2.0 409,261 + -0.2 409,264 + -0.8 409,287 + -0.2 409,350 + +0.7 409,350 + -0.7 409,351 - -0.8 409,470 + HMPREF1181_RS09040 0.13 +0.5 409,655 - HMPREF1181_RS09040 0.26 -3.0 409,688 + HMPREF1181_RS09040 0.28 +1.5 409,823 + HMPREF1181_RS09040 0.37 +0.3 409,823 + HMPREF1181_RS09040 0.37 -1.4 409,824 - HMPREF1181_RS09040 0.37 -0.9 409,880 - HMPREF1181_RS09040 0.41 -2.6 410,175 - HMPREF1181_RS09040 0.61 -0.7 410,187 - HMPREF1181_RS09040 0.62 -0.3 410,323 - HMPREF1181_RS09040 0.71 -3.1 410,325 - HMPREF1181_RS09040 0.71 -0.1 410,527 + HMPREF1181_RS09040 0.84 -0.2 410,528 - HMPREF1181_RS09040 0.84 -0.7 410,528 - HMPREF1181_RS09040 0.84 -0.2 410,553 - HMPREF1181_RS09040 0.86 +0.5 410,553 - HMPREF1181_RS09040 0.86 -0.0 410,553 - HMPREF1181_RS09040 0.86 -1.1 410,649 + +0.1 410,743 - -1.1 410,743 - -0.7 410,792 - +0.2 410,792 - -0.9 410,804 + +0.0 410,804 + -1.3 410,952 + HMPREF1181_RS09045 0.12 -0.2 410,953 - HMPREF1181_RS09045 0.12 +0.0 410,954 + HMPREF1181_RS09045 0.12 -1.3 410,955 - HMPREF1181_RS09045 0.12 +0.0 410,999 - HMPREF1181_RS09045 0.15 -0.8 411,125 + HMPREF1181_RS09045 0.24 +1.1 411,150 + HMPREF1181_RS09045 0.25 -2.4 411,151 - HMPREF1181_RS09045 0.25 -0.3 411,154 + HMPREF1181_RS09045 0.26 -0.8 411,154 + HMPREF1181_RS09045 0.26 -0.2 411,155 - HMPREF1181_RS09045 0.26 -0.6 411,155 - HMPREF1181_RS09045 0.26 -0.7 411,247 + HMPREF1181_RS09045 0.32 +0.1 411,280 + HMPREF1181_RS09045 0.34 -0.4 411,337 + HMPREF1181_RS09045 0.38 +0.3 411,338 - HMPREF1181_RS09045 0.38 -0.2 411,338 - HMPREF1181_RS09045 0.38 -0.4 411,405 + HMPREF1181_RS09045 0.43 +1.3 411,483 - HMPREF1181_RS09045 0.48 +0.2 411,754 - HMPREF1181_RS09045 0.67 -0.9
Or see this region's nucleotide sequence