Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS06515 and HMPREF1181_RS06520 are separated by 5 nucleotides HMPREF1181_RS06520 and HMPREF1181_RS06525 are separated by 80 nucleotides HMPREF1181_RS06525 and HMPREF1181_RS06530 are separated by 46 nucleotides
HMPREF1181_RS06515: HMPREF1181_RS06515 - chloride channel protein, at 662,276 to 664,066
_RS06515
HMPREF1181_RS06520: HMPREF1181_RS06520 - threonylcarbamoyl-AMP synthase, at 664,072 to 664,635
_RS06520
HMPREF1181_RS06525: HMPREF1181_RS06525 - acyl-CoA thioesterase, at 664,716 to 665,147
_RS06525
HMPREF1181_RS06530: HMPREF1181_RS06530 - endonuclease/exonuclease/phosphatase family protein, at 665,194 to 666,057
_RS06530
Position (kb) 664
665 Strain fitness (log2 ratio) -2
-1
0
1 at 664.652 kb on - strand at 664.674 kb on - strand at 664.725 kb on - strand at 664.750 kb on + strand at 664.757 kb on - strand at 664.923 kb on + strand, within HMPREF1181_RS06525 at 665.002 kb on + strand, within HMPREF1181_RS06525 at 665.002 kb on + strand, within HMPREF1181_RS06525 at 665.003 kb on - strand, within HMPREF1181_RS06525 at 665.023 kb on + strand, within HMPREF1181_RS06525 at 665.102 kb on - strand, within HMPREF1181_RS06525 at 665.102 kb on - strand, within HMPREF1181_RS06525 at 665.134 kb on + strand at 665.170 kb on - strand at 665.193 kb on - strand at 665.293 kb on + strand, within HMPREF1181_RS06530 at 665.299 kb on + strand, within HMPREF1181_RS06530 at 665.304 kb on - strand, within HMPREF1181_RS06530 at 665.347 kb on - strand, within HMPREF1181_RS06530 at 665.523 kb on + strand, within HMPREF1181_RS06530 at 665.524 kb on - strand, within HMPREF1181_RS06530 at 665.524 kb on - strand, within HMPREF1181_RS06530 at 665.589 kb on - strand, within HMPREF1181_RS06530 at 665.608 kb on - strand, within HMPREF1181_RS06530
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 664,652 - -0.8 664,674 - -0.2 664,725 - -1.7 664,750 + -0.5 664,757 - +0.3 664,923 + HMPREF1181_RS06525 0.48 +0.4 665,002 + HMPREF1181_RS06525 0.66 +0.2 665,002 + HMPREF1181_RS06525 0.66 +0.8 665,003 - HMPREF1181_RS06525 0.66 +1.6 665,023 + HMPREF1181_RS06525 0.71 +0.1 665,102 - HMPREF1181_RS06525 0.89 +0.3 665,102 - HMPREF1181_RS06525 0.89 -0.3 665,134 + -0.2 665,170 - -0.2 665,193 - -0.1 665,293 + HMPREF1181_RS06530 0.11 -2.1 665,299 + HMPREF1181_RS06530 0.12 -2.2 665,304 - HMPREF1181_RS06530 0.13 -0.2 665,347 - HMPREF1181_RS06530 0.18 -0.6 665,523 + HMPREF1181_RS06530 0.38 -0.9 665,524 - HMPREF1181_RS06530 0.38 -2.7 665,524 - HMPREF1181_RS06530 0.38 +0.2 665,589 - HMPREF1181_RS06530 0.46 +0.8 665,608 - HMPREF1181_RS06530 0.48 -0.8
Or see this region's nucleotide sequence