Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS02885 and HMPREF1181_RS02890 are separated by 387 nucleotides HMPREF1181_RS02890 and HMPREF1181_RS02895 are separated by 103 nucleotides
HMPREF1181_RS02885: HMPREF1181_RS02885 - long-chain fatty acid--CoA ligase, at 719,118 to 720,923
_RS02885
HMPREF1181_RS02890: HMPREF1181_RS02890 - hypothetical protein, at 721,311 to 722,687
_RS02890
HMPREF1181_RS02895: HMPREF1181_RS02895 - peptide chain release factor 2, at 722,791 to 723,909
_RS02895
Position (kb) 721
722
723 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 720.390 kb on - strand, within HMPREF1181_RS02885 at 720.393 kb on - strand, within HMPREF1181_RS02885 at 720.492 kb on + strand, within HMPREF1181_RS02885 at 720.507 kb on - strand, within HMPREF1181_RS02885 at 720.507 kb on - strand, within HMPREF1181_RS02885 at 720.540 kb on + strand, within HMPREF1181_RS02885 at 720.670 kb on - strand, within HMPREF1181_RS02885 at 720.759 kb on - strand at 720.783 kb on + strand at 720.809 kb on - strand at 720.852 kb on - strand at 720.888 kb on + strand at 720.889 kb on - strand at 721.021 kb on - strand at 721.022 kb on + strand at 721.023 kb on - strand at 721.303 kb on - strand at 721.305 kb on + strand at 721.305 kb on + strand at 721.306 kb on - strand at 721.382 kb on + strand at 721.548 kb on - strand, within HMPREF1181_RS02890 at 721.564 kb on + strand, within HMPREF1181_RS02890 at 721.566 kb on + strand, within HMPREF1181_RS02890 at 721.566 kb on + strand, within HMPREF1181_RS02890 at 721.566 kb on + strand, within HMPREF1181_RS02890 at 721.566 kb on + strand, within HMPREF1181_RS02890 at 721.567 kb on - strand, within HMPREF1181_RS02890 at 721.567 kb on - strand, within HMPREF1181_RS02890 at 721.642 kb on + strand, within HMPREF1181_RS02890 at 721.643 kb on - strand, within HMPREF1181_RS02890 at 721.671 kb on - strand, within HMPREF1181_RS02890 at 721.674 kb on - strand, within HMPREF1181_RS02890 at 721.689 kb on + strand, within HMPREF1181_RS02890 at 721.690 kb on - strand, within HMPREF1181_RS02890 at 721.694 kb on + strand, within HMPREF1181_RS02890 at 721.749 kb on - strand, within HMPREF1181_RS02890 at 721.756 kb on - strand, within HMPREF1181_RS02890 at 721.794 kb on + strand, within HMPREF1181_RS02890 at 721.813 kb on + strand, within HMPREF1181_RS02890 at 721.813 kb on + strand, within HMPREF1181_RS02890 at 721.814 kb on - strand, within HMPREF1181_RS02890 at 721.831 kb on + strand, within HMPREF1181_RS02890 at 721.843 kb on - strand, within HMPREF1181_RS02890 at 721.881 kb on + strand, within HMPREF1181_RS02890 at 721.923 kb on + strand, within HMPREF1181_RS02890 at 721.930 kb on - strand, within HMPREF1181_RS02890 at 721.967 kb on - strand, within HMPREF1181_RS02890 at 721.967 kb on - strand, within HMPREF1181_RS02890 at 722.158 kb on - strand, within HMPREF1181_RS02890 at 722.190 kb on - strand, within HMPREF1181_RS02890 at 722.219 kb on + strand, within HMPREF1181_RS02890 at 722.219 kb on + strand, within HMPREF1181_RS02890 at 722.233 kb on - strand, within HMPREF1181_RS02890 at 722.233 kb on - strand, within HMPREF1181_RS02890 at 722.233 kb on - strand, within HMPREF1181_RS02890 at 722.322 kb on - strand, within HMPREF1181_RS02890 at 722.463 kb on - strand, within HMPREF1181_RS02890 at 722.556 kb on + strand at 722.556 kb on + strand at 722.559 kb on - strand at 722.674 kb on + strand at 722.674 kb on + strand at 722.703 kb on - strand at 722.788 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 720,390 - HMPREF1181_RS02885 0.70 -1.8 720,393 - HMPREF1181_RS02885 0.71 +0.8 720,492 + HMPREF1181_RS02885 0.76 -0.2 720,507 - HMPREF1181_RS02885 0.77 -0.6 720,507 - HMPREF1181_RS02885 0.77 -1.9 720,540 + HMPREF1181_RS02885 0.79 -2.2 720,670 - HMPREF1181_RS02885 0.86 -1.3 720,759 - -2.5 720,783 + -0.3 720,809 - -0.9 720,852 - -0.4 720,888 + -0.1 720,889 - -0.3 721,021 - -0.9 721,022 + -0.6 721,023 - -0.0 721,303 - -0.2 721,305 + +0.6 721,305 + -2.4 721,306 - +0.2 721,382 + -1.3 721,548 - HMPREF1181_RS02890 0.17 -1.5 721,564 + HMPREF1181_RS02890 0.18 -0.5 721,566 + HMPREF1181_RS02890 0.19 +0.2 721,566 + HMPREF1181_RS02890 0.19 -0.2 721,566 + HMPREF1181_RS02890 0.19 +1.3 721,566 + HMPREF1181_RS02890 0.19 +1.1 721,567 - HMPREF1181_RS02890 0.19 -0.5 721,567 - HMPREF1181_RS02890 0.19 -1.9 721,642 + HMPREF1181_RS02890 0.24 +0.7 721,643 - HMPREF1181_RS02890 0.24 -1.1 721,671 - HMPREF1181_RS02890 0.26 +0.6 721,674 - HMPREF1181_RS02890 0.26 +0.4 721,689 + HMPREF1181_RS02890 0.27 +0.4 721,690 - HMPREF1181_RS02890 0.28 -1.9 721,694 + HMPREF1181_RS02890 0.28 -1.9 721,749 - HMPREF1181_RS02890 0.32 -1.4 721,756 - HMPREF1181_RS02890 0.32 -1.2 721,794 + HMPREF1181_RS02890 0.35 +0.7 721,813 + HMPREF1181_RS02890 0.36 -1.0 721,813 + HMPREF1181_RS02890 0.36 +0.6 721,814 - HMPREF1181_RS02890 0.37 +1.0 721,831 + HMPREF1181_RS02890 0.38 +0.7 721,843 - HMPREF1181_RS02890 0.39 -1.4 721,881 + HMPREF1181_RS02890 0.41 -1.5 721,923 + HMPREF1181_RS02890 0.44 -0.8 721,930 - HMPREF1181_RS02890 0.45 -0.3 721,967 - HMPREF1181_RS02890 0.48 +0.3 721,967 - HMPREF1181_RS02890 0.48 -0.5 722,158 - HMPREF1181_RS02890 0.62 +0.7 722,190 - HMPREF1181_RS02890 0.64 +1.3 722,219 + HMPREF1181_RS02890 0.66 +1.0 722,219 + HMPREF1181_RS02890 0.66 -1.9 722,233 - HMPREF1181_RS02890 0.67 +0.1 722,233 - HMPREF1181_RS02890 0.67 -0.1 722,233 - HMPREF1181_RS02890 0.67 +3.5 722,322 - HMPREF1181_RS02890 0.73 -0.3 722,463 - HMPREF1181_RS02890 0.84 -1.7 722,556 + -1.5 722,556 + +0.2 722,559 - -1.2 722,674 + +0.9 722,674 + +0.2 722,703 - +0.2 722,788 + -0.1
Or see this region's nucleotide sequence