Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS01410 and HMPREF1181_RS01415 are separated by 24 nucleotides HMPREF1181_RS01415 and HMPREF1181_RS01420 are separated by 176 nucleotides
HMPREF1181_RS01410: HMPREF1181_RS01410 - TonB-dependent receptor, at 335,049 to 338,192
_RS01410
HMPREF1181_RS01415: HMPREF1181_RS01415 - RagB/SusD family nutrient uptake outer membrane protein, at 338,217 to 339,815
_RS01415
HMPREF1181_RS01420: HMPREF1181_RS01420 - hypothetical protein, at 339,992 to 342,892
_RS01420
Position (kb) 338
339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 337.232 kb on + strand, within HMPREF1181_RS01410 at 337.234 kb on + strand, within HMPREF1181_RS01410 at 337.235 kb on - strand, within HMPREF1181_RS01410 at 337.267 kb on + strand, within HMPREF1181_RS01410 at 337.268 kb on - strand, within HMPREF1181_RS01410 at 337.268 kb on - strand, within HMPREF1181_RS01410 at 337.268 kb on - strand, within HMPREF1181_RS01410 at 337.388 kb on - strand, within HMPREF1181_RS01410 at 337.410 kb on + strand, within HMPREF1181_RS01410 at 337.411 kb on - strand, within HMPREF1181_RS01410 at 337.412 kb on + strand, within HMPREF1181_RS01410 at 337.412 kb on + strand, within HMPREF1181_RS01410 at 337.412 kb on + strand, within HMPREF1181_RS01410 at 337.423 kb on - strand, within HMPREF1181_RS01410 at 337.443 kb on + strand, within HMPREF1181_RS01410 at 337.444 kb on - strand, within HMPREF1181_RS01410 at 337.445 kb on + strand, within HMPREF1181_RS01410 at 337.461 kb on + strand, within HMPREF1181_RS01410 at 337.461 kb on + strand, within HMPREF1181_RS01410 at 337.464 kb on - strand, within HMPREF1181_RS01410 at 337.521 kb on + strand, within HMPREF1181_RS01410 at 337.527 kb on + strand, within HMPREF1181_RS01410 at 337.528 kb on - strand, within HMPREF1181_RS01410 at 337.549 kb on + strand, within HMPREF1181_RS01410 at 337.570 kb on + strand, within HMPREF1181_RS01410 at 337.571 kb on - strand, within HMPREF1181_RS01410 at 337.573 kb on - strand, within HMPREF1181_RS01410 at 337.573 kb on - strand, within HMPREF1181_RS01410 at 337.574 kb on + strand, within HMPREF1181_RS01410 at 337.575 kb on - strand, within HMPREF1181_RS01410 at 337.575 kb on - strand, within HMPREF1181_RS01410 at 337.575 kb on - strand, within HMPREF1181_RS01410 at 337.579 kb on + strand, within HMPREF1181_RS01410 at 337.708 kb on + strand, within HMPREF1181_RS01410 at 337.708 kb on + strand, within HMPREF1181_RS01410 at 337.709 kb on - strand, within HMPREF1181_RS01410 at 337.709 kb on - strand, within HMPREF1181_RS01410 at 337.709 kb on - strand, within HMPREF1181_RS01410 at 337.718 kb on + strand, within HMPREF1181_RS01410 at 337.721 kb on - strand, within HMPREF1181_RS01410 at 337.836 kb on - strand, within HMPREF1181_RS01410 at 337.841 kb on + strand, within HMPREF1181_RS01410 at 337.856 kb on + strand, within HMPREF1181_RS01410 at 337.857 kb on - strand, within HMPREF1181_RS01410 at 337.989 kb on - strand at 338.023 kb on + strand at 338.024 kb on - strand at 338.024 kb on - strand at 338.066 kb on + strand at 338.162 kb on + strand at 338.176 kb on + strand at 338.199 kb on - strand at 338.231 kb on + strand at 338.382 kb on + strand, within HMPREF1181_RS01415 at 338.383 kb on - strand, within HMPREF1181_RS01415 at 338.383 kb on - strand, within HMPREF1181_RS01415 at 338.387 kb on + strand, within HMPREF1181_RS01415 at 338.387 kb on + strand, within HMPREF1181_RS01415 at 338.388 kb on - strand, within HMPREF1181_RS01415 at 338.407 kb on + strand, within HMPREF1181_RS01415 at 338.408 kb on - strand, within HMPREF1181_RS01415 at 338.444 kb on - strand, within HMPREF1181_RS01415 at 338.511 kb on - strand, within HMPREF1181_RS01415 at 338.530 kb on + strand, within HMPREF1181_RS01415 at 338.680 kb on + strand, within HMPREF1181_RS01415 at 338.699 kb on - strand, within HMPREF1181_RS01415 at 338.732 kb on + strand, within HMPREF1181_RS01415 at 338.826 kb on + strand, within HMPREF1181_RS01415 at 338.826 kb on + strand, within HMPREF1181_RS01415 at 338.832 kb on - strand, within HMPREF1181_RS01415 at 338.846 kb on + strand, within HMPREF1181_RS01415 at 338.885 kb on + strand, within HMPREF1181_RS01415 at 338.885 kb on - strand, within HMPREF1181_RS01415 at 338.886 kb on + strand, within HMPREF1181_RS01415 at 338.928 kb on + strand, within HMPREF1181_RS01415 at 338.931 kb on + strand, within HMPREF1181_RS01415 at 338.932 kb on - strand, within HMPREF1181_RS01415 at 338.932 kb on - strand, within HMPREF1181_RS01415 at 338.981 kb on + strand, within HMPREF1181_RS01415 at 338.982 kb on - strand, within HMPREF1181_RS01415 at 338.997 kb on - strand, within HMPREF1181_RS01415 at 339.000 kb on + strand, within HMPREF1181_RS01415 at 339.001 kb on - strand, within HMPREF1181_RS01415 at 339.001 kb on - strand, within HMPREF1181_RS01415 at 339.005 kb on + strand, within HMPREF1181_RS01415 at 339.006 kb on - strand, within HMPREF1181_RS01415 at 339.033 kb on + strand, within HMPREF1181_RS01415 at 339.033 kb on + strand, within HMPREF1181_RS01415 at 339.033 kb on + strand, within HMPREF1181_RS01415 at 339.086 kb on + strand, within HMPREF1181_RS01415 at 339.086 kb on + strand, within HMPREF1181_RS01415 at 339.108 kb on + strand, within HMPREF1181_RS01415 at 339.110 kb on + strand, within HMPREF1181_RS01415 at 339.137 kb on - strand, within HMPREF1181_RS01415 at 339.193 kb on - strand, within HMPREF1181_RS01415 at 339.209 kb on - strand, within HMPREF1181_RS01415 at 339.277 kb on + strand, within HMPREF1181_RS01415 at 339.277 kb on + strand, within HMPREF1181_RS01415 at 339.277 kb on + strand, within HMPREF1181_RS01415 at 339.424 kb on + strand, within HMPREF1181_RS01415 at 339.478 kb on - strand, within HMPREF1181_RS01415 at 339.540 kb on - strand, within HMPREF1181_RS01415 at 339.606 kb on + strand, within HMPREF1181_RS01415 at 339.626 kb on + strand, within HMPREF1181_RS01415 at 339.626 kb on + strand, within HMPREF1181_RS01415 at 339.630 kb on + strand, within HMPREF1181_RS01415 at 339.631 kb on - strand, within HMPREF1181_RS01415 at 339.631 kb on - strand, within HMPREF1181_RS01415 at 339.644 kb on - strand, within HMPREF1181_RS01415 at 339.644 kb on - strand, within HMPREF1181_RS01415 at 339.655 kb on + strand, within HMPREF1181_RS01415 at 339.801 kb on - strand at 339.804 kb on + strand at 339.818 kb on + strand at 339.942 kb on + strand at 340.012 kb on - strand at 340.014 kb on - strand at 340.014 kb on - strand at 340.042 kb on - strand at 340.133 kb on + strand at 340.246 kb on + strand at 340.246 kb on + strand at 340.246 kb on + strand at 340.318 kb on + strand, within HMPREF1181_RS01420 at 340.318 kb on + strand, within HMPREF1181_RS01420 at 340.318 kb on + strand, within HMPREF1181_RS01420 at 340.320 kb on + strand, within HMPREF1181_RS01420 at 340.320 kb on + strand, within HMPREF1181_RS01420 at 340.399 kb on + strand, within HMPREF1181_RS01420 at 340.399 kb on + strand, within HMPREF1181_RS01420 at 340.534 kb on + strand, within HMPREF1181_RS01420 at 340.534 kb on + strand, within HMPREF1181_RS01420 at 340.618 kb on + strand, within HMPREF1181_RS01420 at 340.726 kb on + strand, within HMPREF1181_RS01420 at 340.726 kb on + strand, within HMPREF1181_RS01420 at 340.727 kb on - strand, within HMPREF1181_RS01420 at 340.727 kb on - strand, within HMPREF1181_RS01420 at 340.786 kb on - strand, within HMPREF1181_RS01420
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 337,232 + HMPREF1181_RS01410 0.69 -1.1 337,234 + HMPREF1181_RS01410 0.69 -2.3 337,235 - HMPREF1181_RS01410 0.70 -1.1 337,267 + HMPREF1181_RS01410 0.71 -1.0 337,268 - HMPREF1181_RS01410 0.71 -2.5 337,268 - HMPREF1181_RS01410 0.71 +0.4 337,268 - HMPREF1181_RS01410 0.71 -1.1 337,388 - HMPREF1181_RS01410 0.74 -2.2 337,410 + HMPREF1181_RS01410 0.75 +1.0 337,411 - HMPREF1181_RS01410 0.75 -0.6 337,412 + HMPREF1181_RS01410 0.75 -2.2 337,412 + HMPREF1181_RS01410 0.75 -0.3 337,412 + HMPREF1181_RS01410 0.75 -0.6 337,423 - HMPREF1181_RS01410 0.76 -0.6 337,443 + HMPREF1181_RS01410 0.76 -0.9 337,444 - HMPREF1181_RS01410 0.76 -0.7 337,445 + HMPREF1181_RS01410 0.76 -1.1 337,461 + HMPREF1181_RS01410 0.77 -1.6 337,461 + HMPREF1181_RS01410 0.77 -1.4 337,464 - HMPREF1181_RS01410 0.77 -0.1 337,521 + HMPREF1181_RS01410 0.79 -1.0 337,527 + HMPREF1181_RS01410 0.79 +0.5 337,528 - HMPREF1181_RS01410 0.79 -0.6 337,549 + HMPREF1181_RS01410 0.80 -0.5 337,570 + HMPREF1181_RS01410 0.80 -0.5 337,571 - HMPREF1181_RS01410 0.80 -2.8 337,573 - HMPREF1181_RS01410 0.80 -0.8 337,573 - HMPREF1181_RS01410 0.80 +0.9 337,574 + HMPREF1181_RS01410 0.80 -2.1 337,575 - HMPREF1181_RS01410 0.80 -0.5 337,575 - HMPREF1181_RS01410 0.80 -1.5 337,575 - HMPREF1181_RS01410 0.80 -1.3 337,579 + HMPREF1181_RS01410 0.80 +0.5 337,708 + HMPREF1181_RS01410 0.85 -2.1 337,708 + HMPREF1181_RS01410 0.85 -0.5 337,709 - HMPREF1181_RS01410 0.85 -2.4 337,709 - HMPREF1181_RS01410 0.85 -2.5 337,709 - HMPREF1181_RS01410 0.85 +0.1 337,718 + HMPREF1181_RS01410 0.85 -1.8 337,721 - HMPREF1181_RS01410 0.85 -0.8 337,836 - HMPREF1181_RS01410 0.89 -1.7 337,841 + HMPREF1181_RS01410 0.89 -0.6 337,856 + HMPREF1181_RS01410 0.89 -0.7 337,857 - HMPREF1181_RS01410 0.89 -0.2 337,989 - +0.3 338,023 + -1.3 338,024 - -0.8 338,024 - +0.3 338,066 + -2.1 338,162 + -0.9 338,176 + -0.2 338,199 - -0.6 338,231 + -0.8 338,382 + HMPREF1181_RS01415 0.10 +0.3 338,383 - HMPREF1181_RS01415 0.10 -0.1 338,383 - HMPREF1181_RS01415 0.10 -2.4 338,387 + HMPREF1181_RS01415 0.11 -0.9 338,387 + HMPREF1181_RS01415 0.11 -1.2 338,388 - HMPREF1181_RS01415 0.11 -0.8 338,407 + HMPREF1181_RS01415 0.12 -2.2 338,408 - HMPREF1181_RS01415 0.12 -1.3 338,444 - HMPREF1181_RS01415 0.14 -1.2 338,511 - HMPREF1181_RS01415 0.18 -1.4 338,530 + HMPREF1181_RS01415 0.20 -1.1 338,680 + HMPREF1181_RS01415 0.29 -0.0 338,699 - HMPREF1181_RS01415 0.30 -0.6 338,732 + HMPREF1181_RS01415 0.32 -2.2 338,826 + HMPREF1181_RS01415 0.38 -1.8 338,826 + HMPREF1181_RS01415 0.38 -0.9 338,832 - HMPREF1181_RS01415 0.38 -1.4 338,846 + HMPREF1181_RS01415 0.39 -0.5 338,885 + HMPREF1181_RS01415 0.42 -0.1 338,885 - HMPREF1181_RS01415 0.42 -3.1 338,886 + HMPREF1181_RS01415 0.42 -1.5 338,928 + HMPREF1181_RS01415 0.44 -1.2 338,931 + HMPREF1181_RS01415 0.45 -3.0 338,932 - HMPREF1181_RS01415 0.45 +0.1 338,932 - HMPREF1181_RS01415 0.45 -2.2 338,981 + HMPREF1181_RS01415 0.48 -1.5 338,982 - HMPREF1181_RS01415 0.48 -2.5 338,997 - HMPREF1181_RS01415 0.49 -1.0 339,000 + HMPREF1181_RS01415 0.49 -1.5 339,001 - HMPREF1181_RS01415 0.49 +0.7 339,001 - HMPREF1181_RS01415 0.49 -2.5 339,005 + HMPREF1181_RS01415 0.49 -0.8 339,006 - HMPREF1181_RS01415 0.49 -1.5 339,033 + HMPREF1181_RS01415 0.51 -1.5 339,033 + HMPREF1181_RS01415 0.51 -1.0 339,033 + HMPREF1181_RS01415 0.51 -1.6 339,086 + HMPREF1181_RS01415 0.54 -0.4 339,086 + HMPREF1181_RS01415 0.54 -1.0 339,108 + HMPREF1181_RS01415 0.56 -0.6 339,110 + HMPREF1181_RS01415 0.56 -0.9 339,137 - HMPREF1181_RS01415 0.58 -1.6 339,193 - HMPREF1181_RS01415 0.61 -1.6 339,209 - HMPREF1181_RS01415 0.62 +0.1 339,277 + HMPREF1181_RS01415 0.66 -0.9 339,277 + HMPREF1181_RS01415 0.66 -0.6 339,277 + HMPREF1181_RS01415 0.66 -1.0 339,424 + HMPREF1181_RS01415 0.75 -0.3 339,478 - HMPREF1181_RS01415 0.79 -0.7 339,540 - HMPREF1181_RS01415 0.83 -0.8 339,606 + HMPREF1181_RS01415 0.87 +0.5 339,626 + HMPREF1181_RS01415 0.88 -1.4 339,626 + HMPREF1181_RS01415 0.88 -0.6 339,630 + HMPREF1181_RS01415 0.88 -1.5 339,631 - HMPREF1181_RS01415 0.88 -0.9 339,631 - HMPREF1181_RS01415 0.88 -1.3 339,644 - HMPREF1181_RS01415 0.89 -1.5 339,644 - HMPREF1181_RS01415 0.89 -1.9 339,655 + HMPREF1181_RS01415 0.90 -0.1 339,801 - -1.1 339,804 + -3.2 339,818 + +0.5 339,942 + -0.2 340,012 - +1.1 340,014 - -2.8 340,014 - -3.0 340,042 - +1.4 340,133 + -1.2 340,246 + -0.6 340,246 + -0.8 340,246 + -1.0 340,318 + HMPREF1181_RS01420 0.11 -0.2 340,318 + HMPREF1181_RS01420 0.11 +0.1 340,318 + HMPREF1181_RS01420 0.11 -1.6 340,320 + HMPREF1181_RS01420 0.11 +1.6 340,320 + HMPREF1181_RS01420 0.11 -0.6 340,399 + HMPREF1181_RS01420 0.14 -0.4 340,399 + HMPREF1181_RS01420 0.14 -0.2 340,534 + HMPREF1181_RS01420 0.19 -1.0 340,534 + HMPREF1181_RS01420 0.19 -2.4 340,618 + HMPREF1181_RS01420 0.22 -1.3 340,726 + HMPREF1181_RS01420 0.25 -0.5 340,726 + HMPREF1181_RS01420 0.25 -0.5 340,727 - HMPREF1181_RS01420 0.25 -2.1 340,727 - HMPREF1181_RS01420 0.25 +0.3 340,786 - HMPREF1181_RS01420 0.27 +0.1
Or see this region's nucleotide sequence