Experiment: Mucin from porcine stomach type II 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS00695 and HMPREF1181_RS00700 are separated by 35 nucleotides HMPREF1181_RS00700 and HMPREF1181_RS00705 are separated by 184 nucleotides HMPREF1181_RS00705 and HMPREF1181_RS00710 are separated by 109 nucleotides HMPREF1181_RS00710 and HMPREF1181_RS00715 are separated by 184 nucleotides
HMPREF1181_RS00695: HMPREF1181_RS00695 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 156,672 to 157,235
_RS00695
HMPREF1181_RS00700: HMPREF1181_RS00700 - hypothetical protein, at 157,271 to 157,903
_RS00700
HMPREF1181_RS00705: HMPREF1181_RS00705 - FimB/Mfa2 family fimbrial subunit, at 158,088 to 159,050
_RS00705
HMPREF1181_RS00710: HMPREF1181_RS00710 - helix-turn-helix transcriptional regulator, at 159,160 to 159,531
_RS00710
HMPREF1181_RS00715: HMPREF1181_RS00715 - cupin domain-containing protein, at 159,716 to 160,165
_RS00715
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.214 kb on + strand at 157.217 kb on - strand at 157.236 kb on - strand at 157.895 kb on - strand at 157.895 kb on - strand at 157.960 kb on - strand at 158.060 kb on - strand at 158.067 kb on + strand at 158.128 kb on + strand at 158.129 kb on - strand at 158.249 kb on + strand, within HMPREF1181_RS00705 at 158.249 kb on + strand, within HMPREF1181_RS00705 at 158.255 kb on + strand, within HMPREF1181_RS00705 at 158.283 kb on + strand, within HMPREF1181_RS00705 at 158.300 kb on - strand, within HMPREF1181_RS00705 at 158.400 kb on + strand, within HMPREF1181_RS00705 at 158.406 kb on - strand, within HMPREF1181_RS00705 at 158.541 kb on + strand, within HMPREF1181_RS00705 at 158.565 kb on + strand, within HMPREF1181_RS00705 at 158.681 kb on + strand, within HMPREF1181_RS00705 at 158.683 kb on + strand, within HMPREF1181_RS00705 at 158.683 kb on + strand, within HMPREF1181_RS00705 at 158.716 kb on - strand, within HMPREF1181_RS00705 at 158.753 kb on + strand, within HMPREF1181_RS00705 at 158.763 kb on - strand, within HMPREF1181_RS00705 at 158.763 kb on - strand, within HMPREF1181_RS00705 at 158.951 kb on - strand, within HMPREF1181_RS00705 at 158.963 kb on + strand at 159.027 kb on - strand at 159.027 kb on - strand at 159.034 kb on + strand at 159.034 kb on - strand at 159.044 kb on - strand at 159.059 kb on + strand at 159.131 kb on + strand at 159.132 kb on - strand at 159.135 kb on - strand at 159.143 kb on + strand at 159.144 kb on - strand at 159.149 kb on - strand at 159.149 kb on - strand at 159.237 kb on + strand, within HMPREF1181_RS00710 at 159.237 kb on + strand, within HMPREF1181_RS00710 at 159.237 kb on + strand, within HMPREF1181_RS00710 at 159.237 kb on + strand, within HMPREF1181_RS00710 at 159.237 kb on + strand, within HMPREF1181_RS00710 at 159.237 kb on + strand, within HMPREF1181_RS00710 at 159.237 kb on + strand, within HMPREF1181_RS00710 at 159.278 kb on + strand, within HMPREF1181_RS00710 at 159.279 kb on - strand, within HMPREF1181_RS00710 at 159.351 kb on + strand, within HMPREF1181_RS00710 at 159.354 kb on + strand, within HMPREF1181_RS00710 at 159.362 kb on - strand, within HMPREF1181_RS00710 at 159.362 kb on - strand, within HMPREF1181_RS00710 at 159.362 kb on - strand, within HMPREF1181_RS00710 at 159.373 kb on + strand, within HMPREF1181_RS00710 at 159.373 kb on + strand, within HMPREF1181_RS00710 at 159.374 kb on - strand, within HMPREF1181_RS00710 at 159.376 kb on - strand, within HMPREF1181_RS00710 at 159.442 kb on + strand, within HMPREF1181_RS00710 at 159.456 kb on + strand, within HMPREF1181_RS00710 at 159.456 kb on + strand, within HMPREF1181_RS00710 at 159.539 kb on + strand at 159.554 kb on + strand at 159.555 kb on - strand at 159.620 kb on + strand at 159.680 kb on + strand at 159.693 kb on + strand at 159.693 kb on + strand at 159.695 kb on + strand at 159.695 kb on - strand at 159.696 kb on - strand at 159.768 kb on + strand, within HMPREF1181_RS00715 at 159.769 kb on - strand, within HMPREF1181_RS00715 at 159.795 kb on - strand, within HMPREF1181_RS00715 at 159.982 kb on - strand, within HMPREF1181_RS00715
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/mL (C) remove 157,214 + -1.1 157,217 - -1.3 157,236 - -0.3 157,895 - +0.9 157,895 - -0.7 157,960 - +0.0 158,060 - -0.4 158,067 + -0.1 158,128 + -1.3 158,129 - -0.8 158,249 + HMPREF1181_RS00705 0.17 -0.4 158,249 + HMPREF1181_RS00705 0.17 +0.3 158,255 + HMPREF1181_RS00705 0.17 -0.7 158,283 + HMPREF1181_RS00705 0.20 +1.4 158,300 - HMPREF1181_RS00705 0.22 -0.6 158,400 + HMPREF1181_RS00705 0.32 -0.4 158,406 - HMPREF1181_RS00705 0.33 -1.2 158,541 + HMPREF1181_RS00705 0.47 +1.1 158,565 + HMPREF1181_RS00705 0.50 +0.1 158,681 + HMPREF1181_RS00705 0.62 +0.5 158,683 + HMPREF1181_RS00705 0.62 +0.5 158,683 + HMPREF1181_RS00705 0.62 -1.2 158,716 - HMPREF1181_RS00705 0.65 -0.9 158,753 + HMPREF1181_RS00705 0.69 +1.4 158,763 - HMPREF1181_RS00705 0.70 -1.7 158,763 - HMPREF1181_RS00705 0.70 -2.6 158,951 - HMPREF1181_RS00705 0.90 -1.7 158,963 + +0.2 159,027 - +0.7 159,027 - -1.5 159,034 + +0.5 159,034 - +1.2 159,044 - -0.7 159,059 + +1.2 159,131 + +0.7 159,132 - +1.8 159,135 - -0.3 159,143 + -0.5 159,144 - -0.2 159,149 - +0.4 159,149 - -0.3 159,237 + HMPREF1181_RS00710 0.21 -1.0 159,237 + HMPREF1181_RS00710 0.21 -2.1 159,237 + HMPREF1181_RS00710 0.21 +1.8 159,237 + HMPREF1181_RS00710 0.21 -0.9 159,237 + HMPREF1181_RS00710 0.21 -0.3 159,237 + HMPREF1181_RS00710 0.21 +0.2 159,237 + HMPREF1181_RS00710 0.21 -0.1 159,278 + HMPREF1181_RS00710 0.32 +0.4 159,279 - HMPREF1181_RS00710 0.32 +0.1 159,351 + HMPREF1181_RS00710 0.51 -0.3 159,354 + HMPREF1181_RS00710 0.52 -0.7 159,362 - HMPREF1181_RS00710 0.54 -0.8 159,362 - HMPREF1181_RS00710 0.54 -0.1 159,362 - HMPREF1181_RS00710 0.54 -0.8 159,373 + HMPREF1181_RS00710 0.57 +0.2 159,373 + HMPREF1181_RS00710 0.57 -0.7 159,374 - HMPREF1181_RS00710 0.58 -0.5 159,376 - HMPREF1181_RS00710 0.58 -1.2 159,442 + HMPREF1181_RS00710 0.76 +0.2 159,456 + HMPREF1181_RS00710 0.80 +0.9 159,456 + HMPREF1181_RS00710 0.80 -0.4 159,539 + +0.7 159,554 + +1.6 159,555 - -1.9 159,620 + +0.7 159,680 + -1.1 159,693 + -1.5 159,693 + +2.0 159,695 + -0.9 159,695 - -1.6 159,696 - -0.7 159,768 + HMPREF1181_RS00715 0.12 -1.9 159,769 - HMPREF1181_RS00715 0.12 +0.7 159,795 - HMPREF1181_RS00715 0.18 -1.7 159,982 - HMPREF1181_RS00715 0.59 +0.5
Or see this region's nucleotide sequence