Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26095 and LU632_RS26100 are separated by 7 nucleotides LU632_RS26100 and LU632_RS26105 are separated by 16 nucleotides LU632_RS26105 and LU632_RS26110 are separated by 444 nucleotides LU632_RS26110 and LU632_RS26115 overlap by 4 nucleotides LU632_RS26115 and LU632_RS26120 are separated by 134 nucleotides LU632_RS26120 and LU632_RS26125 overlap by 7 nucleotides LU632_RS26125 and LU632_RS26130 are separated by 93 nucleotides
LU632_RS26095: LU632_RS26095 - lysozyme, at 25,610 to 26,035
_RS26095
LU632_RS26100: LU632_RS26100 - phage holin family protein, at 26,043 to 26,345
_RS26100
LU632_RS26105: LU632_RS26105 - hypothetical protein, at 26,362 to 26,520
_RS26105
LU632_RS26110: LU632_RS26110 - ParA family protein, at 26,965 to 27,588
_RS26110
LU632_RS26115: LU632_RS26115 - hypothetical protein, at 27,585 to 27,812
_RS26115
LU632_RS26120: LU632_RS26120 - WGR domain-containing protein, at 27,947 to 28,162
_RS26120
LU632_RS26125: LU632_RS26125 - DUF551 domain-containing protein, at 28,156 to 28,341
_RS26125
LU632_RS26130: LU632_RS26130 - hypothetical protein, at 28,435 to 28,794
_RS26130
Position (kb) 26
27
28 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 25.971 kb on + strand, within LU632_RS26095 at 25.972 kb on - strand, within LU632_RS26095 at 25.972 kb on - strand, within LU632_RS26095 at 26.044 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.097 kb on - strand, within LU632_RS26100 at 26.097 kb on - strand, within LU632_RS26100 at 26.308 kb on - strand, within LU632_RS26100 at 26.367 kb on + strand at 26.367 kb on + strand at 26.525 kb on + strand at 26.658 kb on + strand at 26.698 kb on + strand at 26.698 kb on + strand at 26.699 kb on - strand at 26.863 kb on + strand at 26.898 kb on + strand at 27.003 kb on + strand at 27.004 kb on - strand at 27.015 kb on - strand at 27.134 kb on + strand, within LU632_RS26110 at 27.135 kb on - strand, within LU632_RS26110 at 27.135 kb on - strand, within LU632_RS26110 at 27.215 kb on + strand, within LU632_RS26110 at 27.215 kb on + strand, within LU632_RS26110 at 27.215 kb on + strand, within LU632_RS26110 at 27.215 kb on + strand, within LU632_RS26110 at 27.215 kb on + strand, within LU632_RS26110 at 27.216 kb on - strand, within LU632_RS26110 at 27.216 kb on - strand, within LU632_RS26110 at 27.216 kb on - strand, within LU632_RS26110 at 27.216 kb on - strand, within LU632_RS26110 at 27.216 kb on - strand, within LU632_RS26110 at 27.477 kb on + strand, within LU632_RS26110 at 27.477 kb on + strand, within LU632_RS26110 at 27.478 kb on - strand, within LU632_RS26110 at 27.478 kb on - strand, within LU632_RS26110 at 27.478 kb on - strand, within LU632_RS26110 at 27.478 kb on - strand, within LU632_RS26110 at 27.478 kb on - strand, within LU632_RS26110 at 27.478 kb on - strand, within LU632_RS26110 at 27.478 kb on - strand, within LU632_RS26110 at 27.521 kb on - strand, within LU632_RS26110 at 27.928 kb on - strand at 27.935 kb on + strand at 27.936 kb on - strand at 27.946 kb on + strand at 27.947 kb on - strand at 27.947 kb on - strand at 27.968 kb on - strand at 27.977 kb on + strand, within LU632_RS26120 at 28.032 kb on - strand, within LU632_RS26120 at 28.159 kb on + strand at 28.160 kb on + strand at 28.160 kb on + strand at 28.161 kb on - strand at 28.161 kb on - strand at 28.161 kb on - strand at 28.198 kb on - strand, within LU632_RS26125 at 28.204 kb on + strand, within LU632_RS26125 at 28.204 kb on + strand, within LU632_RS26125 at 28.204 kb on + strand, within LU632_RS26125 at 28.204 kb on + strand, within LU632_RS26125 at 28.205 kb on - strand, within LU632_RS26125 at 28.205 kb on - strand, within LU632_RS26125 at 28.205 kb on - strand, within LU632_RS26125 at 28.205 kb on - strand, within LU632_RS26125 at 28.205 kb on - strand, within LU632_RS26125 at 28.205 kb on - strand, within LU632_RS26125 at 28.262 kb on + strand, within LU632_RS26125 at 28.263 kb on - strand, within LU632_RS26125 at 28.303 kb on - strand, within LU632_RS26125 at 28.546 kb on + strand, within LU632_RS26130 at 28.546 kb on + strand, within LU632_RS26130 at 28.546 kb on + strand, within LU632_RS26130 at 28.547 kb on - strand, within LU632_RS26130 at 28.547 kb on - strand, within LU632_RS26130 at 28.547 kb on - strand, within LU632_RS26130 at 28.547 kb on - strand, within LU632_RS26130 at 28.547 kb on - strand, within LU632_RS26130 at 28.547 kb on - strand, within LU632_RS26130 at 28.547 kb on - strand, within LU632_RS26130 at 28.548 kb on + strand, within LU632_RS26130 at 28.548 kb on + strand, within LU632_RS26130 at 28.548 kb on + strand, within LU632_RS26130 at 28.548 kb on + strand, within LU632_RS26130 at 28.548 kb on + strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 25,971 + LU632_RS26095 0.85 -1.4 25,972 - LU632_RS26095 0.85 +0.6 25,972 - LU632_RS26095 0.85 -0.9 26,044 + -1.7 26,048 + +0.5 26,048 + +4.2 26,048 + -3.7 26,048 + -1.4 26,048 + +3.7 26,048 + -1.4 26,048 + -2.3 26,049 - -3.3 26,049 - +0.2 26,049 - +1.5 26,049 - -2.2 26,049 - -2.5 26,049 - -2.2 26,049 - -2.0 26,049 - -2.8 26,049 - -1.4 26,097 - LU632_RS26100 0.18 -2.5 26,097 - LU632_RS26100 0.18 +1.0 26,308 - LU632_RS26100 0.87 +2.1 26,367 + -1.3 26,367 + -4.2 26,525 + -2.7 26,658 + +0.9 26,698 + +1.4 26,698 + +0.7 26,699 - +1.4 26,863 + -1.8 26,898 + +0.7 27,003 + -3.1 27,004 - -2.5 27,015 - -0.4 27,134 + LU632_RS26110 0.27 -4.1 27,135 - LU632_RS26110 0.27 +0.6 27,135 - LU632_RS26110 0.27 -4.9 27,215 + LU632_RS26110 0.40 -0.2 27,215 + LU632_RS26110 0.40 -4.4 27,215 + LU632_RS26110 0.40 -2.2 27,215 + LU632_RS26110 0.40 +0.6 27,215 + LU632_RS26110 0.40 -1.7 27,216 - LU632_RS26110 0.40 -1.7 27,216 - LU632_RS26110 0.40 -1.3 27,216 - LU632_RS26110 0.40 -2.0 27,216 - LU632_RS26110 0.40 -3.4 27,216 - LU632_RS26110 0.40 -0.4 27,477 + LU632_RS26110 0.82 +0.0 27,477 + LU632_RS26110 0.82 -1.4 27,478 - LU632_RS26110 0.82 -3.2 27,478 - LU632_RS26110 0.82 +1.7 27,478 - LU632_RS26110 0.82 -3.5 27,478 - LU632_RS26110 0.82 -1.4 27,478 - LU632_RS26110 0.82 -1.7 27,478 - LU632_RS26110 0.82 -0.4 27,478 - LU632_RS26110 0.82 -2.2 27,521 - LU632_RS26110 0.89 -2.2 27,928 - +0.2 27,935 + -1.0 27,936 - -0.1 27,946 + -2.0 27,947 - -3.7 27,947 - +0.5 27,968 - +0.9 27,977 + LU632_RS26120 0.14 -0.3 28,032 - LU632_RS26120 0.39 -3.1 28,159 + -1.4 28,160 + -1.9 28,160 + -0.8 28,161 - -0.1 28,161 - -1.4 28,161 - +3.4 28,198 - LU632_RS26125 0.23 -2.7 28,204 + LU632_RS26125 0.26 +0.5 28,204 + LU632_RS26125 0.26 +1.3 28,204 + LU632_RS26125 0.26 +5.1 28,204 + LU632_RS26125 0.26 -0.9 28,205 - LU632_RS26125 0.26 -3.3 28,205 - LU632_RS26125 0.26 -1.7 28,205 - LU632_RS26125 0.26 +0.6 28,205 - LU632_RS26125 0.26 -1.7 28,205 - LU632_RS26125 0.26 +2.2 28,205 - LU632_RS26125 0.26 +1.2 28,262 + LU632_RS26125 0.57 +0.4 28,263 - LU632_RS26125 0.58 +0.7 28,303 - LU632_RS26125 0.79 -2.8 28,546 + LU632_RS26130 0.31 -1.8 28,546 + LU632_RS26130 0.31 -2.2 28,546 + LU632_RS26130 0.31 -0.2 28,547 - LU632_RS26130 0.31 +1.8 28,547 - LU632_RS26130 0.31 -3.8 28,547 - LU632_RS26130 0.31 +1.4 28,547 - LU632_RS26130 0.31 -4.5 28,547 - LU632_RS26130 0.31 -3.5 28,547 - LU632_RS26130 0.31 +0.4 28,547 - LU632_RS26130 0.31 -0.9 28,548 + LU632_RS26130 0.31 -2.7 28,548 + LU632_RS26130 0.31 -2.5 28,548 + LU632_RS26130 0.31 -0.4 28,548 + LU632_RS26130 0.31 -2.5 28,548 + LU632_RS26130 0.31 +0.6 28,549 - LU632_RS26130 0.32 -0.7 28,549 - LU632_RS26130 0.32 -0.9 28,549 - LU632_RS26130 0.32 -1.7 28,549 - LU632_RS26130 0.32 +1.3 28,549 - LU632_RS26130 0.32 -2.4 28,549 - LU632_RS26130 0.32 -4.4 28,549 - LU632_RS26130 0.32 +1.7 28,549 - LU632_RS26130 0.32 -1.8 28,549 - LU632_RS26130 0.32 -2.1
Or see this region's nucleotide sequence