Strain Fitness in Erwinia tracheiphila SCR3

Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS26000

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
				remove
9,506	+			-1.8
9,574	+	LU632_RS25990	0.19	-2.0
9,574	+	LU632_RS25990	0.19	+0.4
9,595	+	LU632_RS25990	0.24	-2.8
9,595	+	LU632_RS25990	0.24	-1.2
9,595	+	LU632_RS25990	0.24	+4.1
9,595	+	LU632_RS25990	0.24	+0.2
9,595	+	LU632_RS25990	0.24	-2.2
9,596	-	LU632_RS25990	0.25	+1.6
9,596	-	LU632_RS25990	0.25	-4.4
9,596	-	LU632_RS25990	0.25	-0.0
9,596	-	LU632_RS25990	0.25	+0.3
9,596	-	LU632_RS25990	0.25	-1.2
9,596	-	LU632_RS25990	0.25	+0.9
9,596	-	LU632_RS25990	0.25	+0.8
9,596	-	LU632_RS25990	0.25	-0.2
9,601	+	LU632_RS25990	0.26	-3.0
9,602	-	LU632_RS25990	0.26	+0.6
9,628	+	LU632_RS25990	0.32	-2.8
9,628	+	LU632_RS25990	0.32	-1.7
9,699	+	LU632_RS25990	0.50	-2.8
9,751	+	LU632_RS25990	0.62	-3.5
9,751	+	LU632_RS25990	0.62	+1.4
9,751	+	LU632_RS25990	0.62	-1.5
9,752	-	LU632_RS25990	0.62	+2.9
9,752	-	LU632_RS25990	0.62	+1.7
9,752	-	LU632_RS25990	0.62	-3.3
9,752	-	LU632_RS25990	0.62	+1.3
9,752	-	LU632_RS25990	0.62	-1.3
9,754	+	LU632_RS25990	0.63	-0.4
9,754	+	LU632_RS25990	0.63	-0.4
9,790	+	LU632_RS25990	0.71	-3.5
9,828	-	LU632_RS25990	0.81	-2.7
9,895	+			-1.1
9,899	-			+0.1
9,899	-			+0.3
9,910	+			-1.0
9,910	+			+1.5
9,910	+			-3.2
9,910	+			-0.9
9,911	-			-1.6
9,911	-			+0.3
9,911	-			-2.1
9,922	+			-1.5
9,923	-			+3.0
9,923	-			+0.1
9,928	+			+3.2
9,929	-			-2.0
10,012	-	LU632_RS25995	0.22	+0.1
10,112	+	LU632_RS25995	0.44	-2.4
10,123	+	LU632_RS25995	0.47	+1.7
10,124	-	LU632_RS25995	0.47	-3.2
10,124	-	LU632_RS25995	0.47	+0.9
10,132	-	LU632_RS25995	0.49	-3.5
10,135	+	LU632_RS25995	0.49	-3.5
10,136	-	LU632_RS25995	0.50	-2.4
10,158	+	LU632_RS25995	0.55	-0.3
10,158	+	LU632_RS25995	0.55	-3.4
10,158	+	LU632_RS25995	0.55	-2.4
10,158	+	LU632_RS25995	0.55	-2.2
10,254	+	LU632_RS25995	0.76	-2.2
10,254	+	LU632_RS25995	0.76	+0.1
10,317	+			+1.1
10,318	-			+0.6
10,318	-			-5.5
10,344	+			+0.9
10,344	+			+0.6
10,344	+			-2.6
10,344	+			-3.5
10,344	+			-2.7
10,345	-			-0.3
10,345	-			-2.0
10,345	-			+0.5
10,345	-			+0.3
10,345	-			+0.2
10,346	+			+3.9
10,346	+			-0.4
10,346	+			+1.6
10,346	+			+0.2
10,347	-			+2.7
10,347	-			+3.2
10,350	+			+0.9
10,350	+			-0.4
10,350	+			-2.0
10,350	+			+1.9
10,350	+			-1.4
10,351	-			+0.9
10,351	-			+0.2
10,450	+			-0.5
10,450	+			+0.2
10,450	+			-3.1
10,450	+			-3.7
10,498	-			+2.2
10,503	+			-1.0
10,503	+			+0.6
10,503	+			+0.6
10,503	+			-1.9
10,503	+			-1.7
10,503	+			-1.4
10,503	+			-0.5
10,503	+			-2.5
10,503	+			-3.9
10,503	+			+0.8
10,503	+			+0.3
10,503	+			+1.7
10,504	-			-2.7
10,504	-			+0.3
10,504	-			+1.9
10,504	-			+1.2
10,506	+			-0.4
10,614	-	LU632_RS26000	0.16	+2.0
10,625	+	LU632_RS26000	0.17	-3.0
10,633	+	LU632_RS26000	0.18	+0.2
10,674	+	LU632_RS26000	0.21	+0.2
10,674	+	LU632_RS26000	0.21	-2.0
10,674	+	LU632_RS26000	0.21	-2.2
10,674	+	LU632_RS26000	0.21	+4.2
10,674	+	LU632_RS26000	0.21	+2.4
10,674	+	LU632_RS26000	0.21	-1.0
10,674	+	LU632_RS26000	0.21	-5.3
10,674	+	LU632_RS26000	0.21	-2.2
10,674	+	LU632_RS26000	0.21	+0.8
10,675	-	LU632_RS26000	0.21	+0.1
10,675	-	LU632_RS26000	0.21	+1.1
10,675	-	LU632_RS26000	0.21	+1.6
10,684	+	LU632_RS26000	0.21	+0.8
10,685	-	LU632_RS26000	0.21	+0.6
10,686	+	LU632_RS26000	0.21	-1.0
10,686	+	LU632_RS26000	0.21	-2.5
10,686	+	LU632_RS26000	0.21	+1.4
10,686	+	LU632_RS26000	0.21	-1.9
10,686	+	LU632_RS26000	0.21	+0.6
10,686	+	LU632_RS26000	0.21	+2.9
10,687	-	LU632_RS26000	0.21	+3.3
10,687	-	LU632_RS26000	0.21	-1.4
10,687	-	LU632_RS26000	0.21	+1.3
10,687	-	LU632_RS26000	0.21	+2.1
10,687	-	LU632_RS26000	0.21	+0.2
10,705	-	LU632_RS26000	0.23	-1.0
10,705	-	LU632_RS26000	0.23	+1.7
10,705	-	LU632_RS26000	0.23	+1.7
10,774	+	LU632_RS26000	0.27	+1.4
10,783	+	LU632_RS26000	0.28	-4.2
10,794	+	LU632_RS26000	0.29	-1.4
10,795	-	LU632_RS26000	0.29	+0.2
10,795	-	LU632_RS26000	0.29	-0.2
10,795	-	LU632_RS26000	0.29	-2.5
10,928	-	LU632_RS26000	0.38	+1.0
10,977	+	LU632_RS26000	0.41	-0.9
10,977	+	LU632_RS26000	0.41	-0.0
10,978	-	LU632_RS26000	0.41	-0.1
10,998	+	LU632_RS26000	0.42	+3.1
10,999	-	LU632_RS26000	0.43	+0.1
10,999	-	LU632_RS26000	0.43	-0.1
11,026	+	LU632_RS26000	0.44	-3.8
11,048	+	LU632_RS26000	0.46	-1.4
11,056	+	LU632_RS26000	0.46	-2.7
11,109	+	LU632_RS26000	0.50	+1.3
11,109	+	LU632_RS26000	0.50	+3.9
11,109	+	LU632_RS26000	0.50	-3.8
11,109	+	LU632_RS26000	0.50	+0.3
11,109	+	LU632_RS26000	0.50	+0.3
11,109	+	LU632_RS26000	0.50	-0.1
11,110	-	LU632_RS26000	0.50	-4.2
11,110	-	LU632_RS26000	0.50	-3.0
11,110	-	LU632_RS26000	0.50	+0.7
11,110	-	LU632_RS26000	0.50	+0.2
11,110	-	LU632_RS26000	0.50	-0.1
11,110	-	LU632_RS26000	0.50	+0.9
11,110	-	LU632_RS26000	0.50	-1.4
11,110	-	LU632_RS26000	0.50	-1.7
11,110	-	LU632_RS26000	0.50	-3.4
11,110	-	LU632_RS26000	0.50	+3.9
11,110	-	LU632_RS26000	0.50	-1.0
11,118	-	LU632_RS26000	0.51	-3.1
11,166	+	LU632_RS26000	0.54	+3.1
11,167	-	LU632_RS26000	0.54	-2.6
11,494	+	LU632_RS26000	0.76	+1.2
11,604	+	LU632_RS26000	0.83	+6.7
11,604	+	LU632_RS26000	0.83	-1.2
11,604	+	LU632_RS26000	0.83	+1.1
11,605	-	LU632_RS26000	0.84	-1.4
11,605	-	LU632_RS26000	0.84	+0.9
11,605	-	LU632_RS26000	0.84	+2.4
11,634	+	LU632_RS26000	0.85	-0.2
11,635	-	LU632_RS26000	0.86	+0.2
11,635	-	LU632_RS26000	0.86	+0.7
11,635	-	LU632_RS26000	0.86	+1.5
11,638	-	LU632_RS26000	0.86	+0.7
11,656	-	LU632_RS26000	0.87	-0.7
11,656	-	LU632_RS26000	0.87	+0.6
11,706	+			-2.8
11,848	+			-2.5
11,848	+			-0.0
11,848	+			-0.9
11,848	+			-2.9
11,849	-			+0.1
11,849	-			-1.4
11,849	-			-1.3
11,849	-			-4.0
11,849	-			-3.4
11,852	+			-2.0
11,852	+			+1.3
11,852	+			-1.0
11,852	+			+2.0
11,852	+			-2.9
11,853	-			-1.0
11,853	-			-1.0
11,853	-			-0.9
11,853	-			-3.9
11,853	-			-0.3
11,853	-			+0.4
11,853	-			-0.6
11,853	-			+2.5
11,882	-			+0.6
11,900	+			-2.6
11,900	+			-5.4
11,904	+			-1.0
11,905	-			+3.4
11,934	+	LU632_RS26005	0.15	-0.1
11,937	+	LU632_RS26005	0.16	-0.7
11,938	-	LU632_RS26005	0.16	-3.2
11,964	+	LU632_RS26005	0.20	+0.2
11,965	-	LU632_RS26005	0.21	-2.2
12,013	-	LU632_RS26005	0.29	+0.7
12,037	-	LU632_RS26005	0.34	-0.4
12,099	-	LU632_RS26005	0.45	+0.2
12,099	-	LU632_RS26005	0.45	-1.4
12,171	+	LU632_RS26005	0.58	+0.0
12,195	+	LU632_RS26005	0.62	-2.0
12,274	+	LU632_RS26005	0.77	+1.3
12,377	+			-2.2
12,377	+			-0.8
12,434	-			-1.0
12,434	-			+1.2
12,461	+	LU632_RS26010	0.15	-1.1
12,461	+	LU632_RS26010	0.15	-2.4
12,461	+	LU632_RS26010	0.15	+1.5
12,462	-	LU632_RS26010	0.15	-0.7
12,462	-	LU632_RS26010	0.15	-2.5
12,466	+	LU632_RS26010	0.16	+0.6
12,466	+	LU632_RS26010	0.16	-1.1
12,467	-	LU632_RS26010	0.17	-3.1
12,488	+	LU632_RS26010	0.22	-0.5
12,488	+	LU632_RS26010	0.22	-2.8
12,489	-	LU632_RS26010	0.23	-0.2
12,490	+	LU632_RS26010	0.23	-3.5
12,516	-	LU632_RS26010	0.30	+0.9
12,533	+	LU632_RS26010	0.34	-3.7
12,533	+	LU632_RS26010	0.34	-1.4
12,534	-	LU632_RS26010	0.35	-0.6
12,651	+	LU632_RS26010	0.66	-1.8
12,665	+	LU632_RS26010	0.70	-0.4
12,665	+	LU632_RS26010	0.70	-1.7
12,665	+	LU632_RS26010	0.70	-2.6
12,665	+	LU632_RS26010	0.70	+0.6
12,666	-	LU632_RS26010	0.70	+1.4
12,666	-	LU632_RS26010	0.70	-2.2
12,666	-	LU632_RS26010	0.70	-2.7
12,666	-	LU632_RS26010	0.70	-0.4
12,666	-	LU632_RS26010	0.70	-3.3
12,666	-	LU632_RS26010	0.70	-1.4
12,666	-	LU632_RS26010	0.70	-4.7
12,708	+	LU632_RS26010	0.81	+2.9
12,708	+	LU632_RS26010	0.81	-2.8
12,795	+			-2.5
12,795	+			-3.1
12,796	-			-2.5
12,796	-			-3.6
12,796	-			-2.3
12,796	-			-0.6
12,796	-			+0.2
12,796	-			+1.2
12,796	-			-0.6
12,796	-			+0.6
12,796	-			-2.1
12,813	+			-0.8

Or see this region's nucleotide sequence