Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25995

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
9,114	+				-3.1
9,114	+				+1.2
9,115	-				-3.0
9,115	-				-2.0
9,115	-				-2.2
9,137	+				-0.7
9,137	+				-1.8
9,137	+				+0.6
9,138	-				-0.6
9,148	+				-0.2
9,205	+				-0.7
9,205	+				+1.2
9,205	+				+0.8
9,289	+				-2.4
9,333	+				-2.3
9,333	+				-0.4
9,333	+				-1.0
9,334	-				+0.6
9,334	-				-1.7
9,506	+				-1.8
9,574	+		LU632_RS25990	0.19	-2.0
9,574	+		LU632_RS25990	0.19	+0.4
9,595	+		LU632_RS25990	0.24	-2.8
9,595	+		LU632_RS25990	0.24	-1.2
9,595	+		LU632_RS25990	0.24	+4.1
9,595	+		LU632_RS25990	0.24	+0.2
9,595	+		LU632_RS25990	0.24	-2.2
9,596	-		LU632_RS25990	0.25	+1.6
9,596	-		LU632_RS25990	0.25	-4.4
9,596	-		LU632_RS25990	0.25	-0.0
9,596	-		LU632_RS25990	0.25	+0.3
9,596	-		LU632_RS25990	0.25	-1.2
9,596	-		LU632_RS25990	0.25	+0.9
9,596	-		LU632_RS25990	0.25	+0.8
9,596	-		LU632_RS25990	0.25	-0.2
9,601	+		LU632_RS25990	0.26	-3.0
9,602	-		LU632_RS25990	0.26	+0.6
9,628	+		LU632_RS25990	0.32	-2.8
9,628	+		LU632_RS25990	0.32	-1.7
9,699	+		LU632_RS25990	0.50	-2.8
9,751	+		LU632_RS25990	0.62	-3.5
9,751	+		LU632_RS25990	0.62	+1.4
9,751	+		LU632_RS25990	0.62	-1.5
9,752	-		LU632_RS25990	0.62	+2.9
9,752	-		LU632_RS25990	0.62	+1.7
9,752	-		LU632_RS25990	0.62	-3.3
9,752	-		LU632_RS25990	0.62	+1.3
9,752	-		LU632_RS25990	0.62	-1.3
9,754	+		LU632_RS25990	0.63	-0.4
9,754	+		LU632_RS25990	0.63	-0.4
9,790	+		LU632_RS25990	0.71	-3.5
9,828	-		LU632_RS25990	0.81	-2.7
9,895	+				-1.1
9,899	-				+0.1
9,899	-				+0.3
9,910	+				-1.0
9,910	+				+1.5
9,910	+				-3.2
9,910	+				-0.9
9,911	-				-1.6
9,911	-				+0.3
9,911	-				-2.1
9,922	+				-1.5
9,923	-				+3.0
9,923	-				+0.1
9,928	+				+3.2
9,929	-				-2.0
10,012	-		LU632_RS25995	0.22	+0.1
10,112	+		LU632_RS25995	0.44	-2.4
10,123	+		LU632_RS25995	0.47	+1.7
10,124	-		LU632_RS25995	0.47	-3.2
10,124	-		LU632_RS25995	0.47	+0.9
10,132	-		LU632_RS25995	0.49	-3.5
10,135	+		LU632_RS25995	0.49	-3.5
10,136	-		LU632_RS25995	0.50	-2.4
10,158	+		LU632_RS25995	0.55	-0.3
10,158	+		LU632_RS25995	0.55	-3.4
10,158	+		LU632_RS25995	0.55	-2.4
10,158	+		LU632_RS25995	0.55	-2.2
10,254	+		LU632_RS25995	0.76	-2.2
10,254	+		LU632_RS25995	0.76	+0.1
10,317	+				+1.1
10,318	-				+0.6
10,318	-				-5.5
10,344	+				+0.9
10,344	+				+0.6
10,344	+				-2.6
10,344	+				-3.5
10,344	+				-2.7
10,345	-				-0.3
10,345	-				-2.0
10,345	-				+0.5
10,345	-				+0.3
10,345	-				+0.2
10,346	+				+3.9
10,346	+				-0.4
10,346	+				+1.6
10,346	+				+0.2
10,347	-				+2.7
10,347	-				+3.2
10,350	+				+0.9
10,350	+				-0.4
10,350	+				-2.0
10,350	+				+1.9
10,350	+				-1.4
10,351	-				+0.9
10,351	-				+0.2
10,450	+				-0.5
10,450	+				+0.2
10,450	+				-3.1
10,450	+				-3.7
10,498	-				+2.2
10,503	+				-1.0
10,503	+				+0.6
10,503	+				+0.6
10,503	+				-1.9
10,503	+				-1.7
10,503	+				-1.4
10,503	+				-0.5
10,503	+				-2.5
10,503	+				-3.9
10,503	+				+0.8
10,503	+				+0.3
10,503	+				+1.7
10,504	-				-2.7
10,504	-				+0.3
10,504	-				+1.9
10,504	-				+1.2
10,506	+				-0.4
10,614	-		LU632_RS26000	0.16	+2.0
10,625	+		LU632_RS26000	0.17	-3.0
10,633	+		LU632_RS26000	0.18	+0.2
10,674	+		LU632_RS26000	0.21	+0.2
10,674	+		LU632_RS26000	0.21	-2.0
10,674	+		LU632_RS26000	0.21	-2.2
10,674	+		LU632_RS26000	0.21	+4.2
10,674	+		LU632_RS26000	0.21	+2.4
10,674	+		LU632_RS26000	0.21	-1.0
10,674	+		LU632_RS26000	0.21	-5.3
10,674	+		LU632_RS26000	0.21	-2.2
10,674	+		LU632_RS26000	0.21	+0.8
10,675	-		LU632_RS26000	0.21	+0.1
10,675	-		LU632_RS26000	0.21	+1.1
10,675	-		LU632_RS26000	0.21	+1.6
10,684	+		LU632_RS26000	0.21	+0.8
10,685	-		LU632_RS26000	0.21	+0.6
10,686	+		LU632_RS26000	0.21	-1.0
10,686	+		LU632_RS26000	0.21	-2.5
10,686	+		LU632_RS26000	0.21	+1.4
10,686	+		LU632_RS26000	0.21	-1.9
10,686	+		LU632_RS26000	0.21	+0.6
10,686	+		LU632_RS26000	0.21	+2.9
10,687	-		LU632_RS26000	0.21	+3.3
10,687	-		LU632_RS26000	0.21	-1.4
10,687	-		LU632_RS26000	0.21	+1.3
10,687	-		LU632_RS26000	0.21	+2.1
10,687	-		LU632_RS26000	0.21	+0.2
10,705	-		LU632_RS26000	0.23	-1.0
10,705	-		LU632_RS26000	0.23	+1.7
10,705	-		LU632_RS26000	0.23	+1.7
10,774	+		LU632_RS26000	0.27	+1.4
10,783	+		LU632_RS26000	0.28	-4.2
10,794	+		LU632_RS26000	0.29	-1.4
10,795	-		LU632_RS26000	0.29	+0.2
10,795	-		LU632_RS26000	0.29	-0.2
10,795	-		LU632_RS26000	0.29	-2.5
10,928	-		LU632_RS26000	0.38	+1.0
10,977	+		LU632_RS26000	0.41	-0.9
10,977	+		LU632_RS26000	0.41	-0.0
10,978	-		LU632_RS26000	0.41	-0.1
10,998	+		LU632_RS26000	0.42	+3.1
10,999	-		LU632_RS26000	0.43	+0.1
10,999	-		LU632_RS26000	0.43	-0.1
11,026	+		LU632_RS26000	0.44	-3.8
11,048	+		LU632_RS26000	0.46	-1.4
11,056	+		LU632_RS26000	0.46	-2.7
11,109	+		LU632_RS26000	0.50	+1.3
11,109	+		LU632_RS26000	0.50	+3.9
11,109	+		LU632_RS26000	0.50	-3.8
11,109	+		LU632_RS26000	0.50	+0.3
11,109	+		LU632_RS26000	0.50	+0.3
11,109	+		LU632_RS26000	0.50	-0.1
11,110	-		LU632_RS26000	0.50	-4.2
11,110	-		LU632_RS26000	0.50	-3.0
11,110	-		LU632_RS26000	0.50	+0.7
11,110	-		LU632_RS26000	0.50	+0.2
11,110	-		LU632_RS26000	0.50	-0.1
11,110	-		LU632_RS26000	0.50	+0.9
11,110	-		LU632_RS26000	0.50	-1.4
11,110	-		LU632_RS26000	0.50	-1.7
11,110	-		LU632_RS26000	0.50	-3.4
11,110	-		LU632_RS26000	0.50	+3.9
11,110	-		LU632_RS26000	0.50	-1.0
11,118	-		LU632_RS26000	0.51	-3.1
11,166	+		LU632_RS26000	0.54	+3.1
11,167	-		LU632_RS26000	0.54	-2.6