Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25760 and LU632_RS25765 are separated by 51 nucleotides LU632_RS25765 and LU632_RS25770 are separated by 703 nucleotides LU632_RS25770 and LU632_RS25775 are separated by 150 nucleotides LU632_RS25775 and LU632_RS25780 are separated by 11 nucleotides
LU632_RS25760: LU632_RS25760 - hypothetical protein, at 7,054 to 7,383
_RS25760
LU632_RS25765: LU632_RS25765 - hypothetical protein, at 7,435 to 7,629
_RS25765
LU632_RS25770: LU632_RS25770 - relaxosome protein TraM, at 8,333 to 8,740
_RS25770
LU632_RS25775: LU632_RS25775 - DUF5710 domain-containing protein, at 8,891 to 9,511
_RS25775
LU632_RS25780: LU632_RS25780 - helix-turn-helix domain-containing protein, at 9,523 to 10,080
_RS25780
Position (kb) 8
9 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 7.681 kb on + strand at 7.683 kb on + strand at 7.684 kb on - strand at 7.716 kb on + strand at 7.716 kb on + strand at 7.717 kb on - strand at 7.717 kb on - strand at 7.791 kb on + strand at 7.954 kb on - strand at 8.054 kb on - strand at 8.466 kb on + strand, within LU632_RS25770 at 8.517 kb on + strand, within LU632_RS25770 at 8.522 kb on - strand, within LU632_RS25770 at 8.527 kb on - strand, within LU632_RS25770 at 8.654 kb on - strand, within LU632_RS25770 at 8.869 kb on - strand at 9.303 kb on + strand, within LU632_RS25775 at 9.420 kb on + strand, within LU632_RS25775 at 9.483 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 7,681 + +0.3 7,683 + -0.3 7,684 - +1.4 7,716 + +0.5 7,716 + +2.6 7,717 - -1.1 7,717 - +0.1 7,791 + -0.3 7,954 - +0.5 8,054 - -1.7 8,466 + LU632_RS25770 0.33 +0.8 8,517 + LU632_RS25770 0.45 +3.1 8,522 - LU632_RS25770 0.46 +0.9 8,527 - LU632_RS25770 0.48 +2.2 8,654 - LU632_RS25770 0.79 -2.9 8,869 - +0.3 9,303 + LU632_RS25775 0.66 +0.7 9,420 + LU632_RS25775 0.85 +0.1 9,483 + +3.1
Or see this region's nucleotide sequence