Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25620

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25610 and LU632_RS25615 are separated by 94 nucleotidesLU632_RS25615 and LU632_RS25620 are separated by 17 nucleotidesLU632_RS25620 and LU632_RS25625 are separated by 77 nucleotides LU632_RS25610: LU632_RS25610 - antitermination protein NusG, at 53,664 to 54,122 _RS25610 LU632_RS25615: LU632_RS25615 - hypothetical protein, at 54,217 to 54,465 _RS25615 LU632_RS25620: LU632_RS25620 - hypothetical protein, at 54,483 to 54,683 _RS25620 LU632_RS25625: LU632_RS25625 - toxin co-regulated pilus biosynthesis Q family protein, at 54,761 to 55,768 _RS25625 Position (kb) 54 55Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 53.508 kb on + strandat 53.508 kb on + strandat 53.509 kb on - strandat 53.511 kb on - strandat 53.633 kb on + strandat 53.633 kb on + strandat 53.633 kb on + strandat 53.634 kb on - strandat 53.636 kb on - strandat 53.639 kb on + strandat 53.676 kb on + strandat 53.746 kb on + strand, within LU632_RS25610at 53.839 kb on + strand, within LU632_RS25610at 53.950 kb on + strand, within LU632_RS25610at 53.978 kb on - strand, within LU632_RS25610at 54.010 kb on + strand, within LU632_RS25610at 54.011 kb on - strand, within LU632_RS25610at 54.012 kb on + strand, within LU632_RS25610at 54.013 kb on - strand, within LU632_RS25610at 54.013 kb on - strand, within LU632_RS25610at 54.014 kb on + strand, within LU632_RS25610at 54.015 kb on - strand, within LU632_RS25610at 54.015 kb on - strand, within LU632_RS25610at 54.024 kb on - strand, within LU632_RS25610at 54.024 kb on - strand, within LU632_RS25610at 54.098 kb on + strandat 54.138 kb on + strandat 54.138 kb on + strandat 54.139 kb on - strandat 54.140 kb on + strandat 54.153 kb on - strandat 54.188 kb on + strandat 54.206 kb on + strandat 54.206 kb on + strandat 54.206 kb on + strandat 54.206 kb on + strandat 54.207 kb on - strandat 54.207 kb on - strandat 54.207 kb on - strandat 54.217 kb on - strandat 54.237 kb on - strandat 54.253 kb on - strand, within LU632_RS25615at 54.309 kb on + strand, within LU632_RS25615at 54.315 kb on - strand, within LU632_RS25615at 54.402 kb on + strand, within LU632_RS25615at 54.403 kb on - strand, within LU632_RS25615at 54.403 kb on - strand, within LU632_RS25615at 54.403 kb on - strand, within LU632_RS25615at 54.437 kb on + strand, within LU632_RS25615at 54.463 kb on + strandat 54.464 kb on - strandat 54.482 kb on + strandat 54.482 kb on + strandat 54.482 kb on + strandat 54.482 kb on + strandat 54.482 kb on + strandat 54.482 kb on + strandat 54.482 kb on + strandat 54.482 kb on + strandat 54.483 kb on - strandat 54.483 kb on - strandat 54.483 kb on - strandat 54.483 kb on - strandat 54.483 kb on - strandat 54.483 kb on - strandat 54.483 kb on - strandat 54.483 kb on - strandat 54.488 kb on + strandat 54.515 kb on + strand, within LU632_RS25620at 54.545 kb on + strand, within LU632_RS25620at 54.591 kb on - strand, within LU632_RS25620at 54.628 kb on + strand, within LU632_RS25620at 54.629 kb on - strand, within LU632_RS25620at 54.672 kb on + strandat 54.673 kb on - strandat 54.684 kb on + strandat 54.685 kb on - strandat 54.773 kb on + strandat 54.773 kb on + strandat 54.774 kb on - strandat 54.882 kb on + strand, within LU632_RS25625at 54.933 kb on + strand, within LU632_RS25625at 54.933 kb on + strand, within LU632_RS25625at 54.934 kb on - strand, within LU632_RS25625at 54.969 kb on + strand, within LU632_RS25625at 54.969 kb on + strand, within LU632_RS25625at 54.969 kb on + strand, within LU632_RS25625at 54.970 kb on - strand, within LU632_RS25625at 55.014 kb on + strand, within LU632_RS25625at 55.107 kb on + strand, within LU632_RS25625at 55.141 kb on + strand, within LU632_RS25625at 55.141 kb on + strand, within LU632_RS25625at 55.142 kb on - strand, within LU632_RS25625at 55.143 kb on + strand, within LU632_RS25625at 55.143 kb on + strand, within LU632_RS25625at 55.144 kb on - strand, within LU632_RS25625at 55.208 kb on + strand, within LU632_RS25625at 55.208 kb on + strand, within LU632_RS25625at 55.209 kb on - strand, within LU632_RS25625at 55.286 kb on + strand, within LU632_RS25625at 55.286 kb on - strand, within LU632_RS25625at 55.287 kb on - strand, within LU632_RS25625at 55.287 kb on - strand, within LU632_RS25625at 55.287 kb on - strand, within LU632_RS25625at 55.287 kb on - strand, within LU632_RS25625at 55.287 kb on - strand, within LU632_RS25625at 55.287 kb on - strand, within LU632_RS25625at 55.287 kb on - strand, within LU632_RS25625at 55.288 kb on + strand, within LU632_RS25625at 55.288 kb on + strand, within LU632_RS25625at 55.538 kb on + strand, within LU632_RS25625at 55.539 kb on - strand, within LU632_RS25625at 55.539 kb on - strand, within LU632_RS25625at 55.539 kb on - strand, within LU632_RS25625at 55.617 kb on - strand, within LU632_RS25625at 55.654 kb on + strand, within LU632_RS25625at 55.655 kb on - strand, within LU632_RS25625

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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53,508 + +0.7
53,508 + +0.4
53,509 - -3.0
53,511 - -1.1
53,633 + +0.4
53,633 + -4.1
53,633 + +1.7
53,634 - -2.5
53,636 - -1.4
53,639 + +0.4
53,676 + +1.2
53,746 + LU632_RS25610 0.18 -2.7
53,839 + LU632_RS25610 0.38 -2.9
53,950 + LU632_RS25610 0.62 +4.2
53,978 - LU632_RS25610 0.68 +0.5
54,010 + LU632_RS25610 0.75 +0.8
54,011 - LU632_RS25610 0.76 +0.1
54,012 + LU632_RS25610 0.76 -0.9
54,013 - LU632_RS25610 0.76 -2.4
54,013 - LU632_RS25610 0.76 +1.6
54,014 + LU632_RS25610 0.76 +0.3
54,015 - LU632_RS25610 0.76 -1.3
54,015 - LU632_RS25610 0.76 -1.3
54,024 - LU632_RS25610 0.78 -2.8
54,024 - LU632_RS25610 0.78 -1.5
54,098 + -1.1
54,138 + +1.5
54,138 + +1.3
54,139 - +0.1
54,140 + -2.7
54,153 - +1.3
54,188 + -3.7
54,206 + +0.3
54,206 + -0.1
54,206 + +0.3
54,206 + -4.2
54,207 - +0.4
54,207 - -2.5
54,207 - -1.3
54,217 - +1.3
54,237 - +1.0
54,253 - LU632_RS25615 0.14 -2.7
54,309 + LU632_RS25615 0.37 -0.3
54,315 - LU632_RS25615 0.39 +0.8
54,402 + LU632_RS25615 0.74 -1.3
54,403 - LU632_RS25615 0.75 -1.5
54,403 - LU632_RS25615 0.75 +1.1
54,403 - LU632_RS25615 0.75 -1.7
54,437 + LU632_RS25615 0.88 -2.5
54,463 + -2.7
54,464 - +0.2
54,482 + -2.5
54,482 + -2.0
54,482 + -0.3
54,482 + -2.2
54,482 + -0.5
54,482 + +0.1
54,482 + -2.0
54,482 + -2.5
54,483 - +0.1
54,483 - -1.3
54,483 - -0.8
54,483 - +0.8
54,483 - +1.5
54,483 - -2.0
54,483 - +0.9
54,483 - +2.9
54,488 + -2.5
54,515 + LU632_RS25620 0.16 -0.3
54,545 + LU632_RS25620 0.31 +1.3
54,591 - LU632_RS25620 0.54 +0.9
54,628 + LU632_RS25620 0.72 +2.2
54,629 - LU632_RS25620 0.73 +1.1
54,672 + +1.0
54,673 - +1.1
54,684 + -1.2
54,685 - -1.3
54,773 + +0.9
54,773 + -0.5
54,774 - -0.8
54,882 + LU632_RS25625 0.12 -1.0
54,933 + LU632_RS25625 0.17 +0.6
54,933 + LU632_RS25625 0.17 +0.3
54,934 - LU632_RS25625 0.17 +0.7
54,969 + LU632_RS25625 0.21 +0.3
54,969 + LU632_RS25625 0.21 +1.3
54,969 + LU632_RS25625 0.21 -0.8
54,970 - LU632_RS25625 0.21 -0.7
55,014 + LU632_RS25625 0.25 +0.3
55,107 + LU632_RS25625 0.34 -2.5
55,141 + LU632_RS25625 0.38 +0.3
55,141 + LU632_RS25625 0.38 +2.9
55,142 - LU632_RS25625 0.38 +1.9
55,143 + LU632_RS25625 0.38 +0.9
55,143 + LU632_RS25625 0.38 +0.3
55,144 - LU632_RS25625 0.38 -1.8
55,208 + LU632_RS25625 0.44 -0.6
55,208 + LU632_RS25625 0.44 -1.0
55,209 - LU632_RS25625 0.44 +2.1
55,286 + LU632_RS25625 0.52 +1.9
55,286 - LU632_RS25625 0.52 -0.7
55,287 - LU632_RS25625 0.52 +2.4
55,287 - LU632_RS25625 0.52 +1.4
55,287 - LU632_RS25625 0.52 +0.3
55,287 - LU632_RS25625 0.52 -1.5
55,287 - LU632_RS25625 0.52 -2.5
55,287 - LU632_RS25625 0.52 -3.7
55,287 - LU632_RS25625 0.52 -1.3
55,288 + LU632_RS25625 0.52 +0.3
55,288 + LU632_RS25625 0.52 +3.6
55,538 + LU632_RS25625 0.77 +0.5
55,539 - LU632_RS25625 0.77 +1.0
55,539 - LU632_RS25625 0.77 -0.9
55,539 - LU632_RS25625 0.77 -0.6
55,617 - LU632_RS25625 0.85 -2.9
55,654 + LU632_RS25625 0.89 -1.7
55,655 - LU632_RS25625 0.89 -0.4

Or see this region's nucleotide sequence