Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25570

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25560 and LU632_RS25565 overlap by 4 nucleotidesLU632_RS25565 and LU632_RS25570 are separated by 113 nucleotidesLU632_RS25570 and LU632_RS25575 are separated by 190 nucleotides LU632_RS25560: LU632_RS25560 - AAA family ATPase, at 41,769 to 42,395 _RS25560 LU632_RS25565: LU632_RS25565 - hypothetical protein, at 42,392 to 42,694 _RS25565 LU632_RS25570: LU632_RS25570 - ribbon-helix-helix domain-containing protein, at 42,808 to 42,987 _RS25570 LU632_RS25575: LU632_RS25575 - hypothetical protein, at 43,178 to 44,383 _RS25575 Position (kb) 42 43Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 42.692 kb on + strandat 42.704 kb on - strandat 42.771 kb on - strandat 42.805 kb on - strandat 42.809 kb on + strandat 42.809 kb on + strandat 42.810 kb on - strandat 42.850 kb on + strand, within LU632_RS25570at 42.850 kb on + strand, within LU632_RS25570at 42.851 kb on - strand, within LU632_RS25570at 42.900 kb on + strand, within LU632_RS25570at 42.901 kb on - strand, within LU632_RS25570at 42.901 kb on - strand, within LU632_RS25570at 42.920 kb on - strand, within LU632_RS25570at 42.952 kb on - strand, within LU632_RS25570at 43.057 kb on - strandat 43.097 kb on + strandat 43.098 kb on - strandat 43.098 kb on - strandat 43.225 kb on + strandat 43.225 kb on + strandat 43.226 kb on - strandat 43.243 kb on + strandat 43.281 kb on - strandat 43.307 kb on - strand, within LU632_RS25575at 43.307 kb on - strand, within LU632_RS25575at 43.307 kb on - strand, within LU632_RS25575at 43.332 kb on + strand, within LU632_RS25575at 43.332 kb on + strand, within LU632_RS25575at 43.332 kb on + strand, within LU632_RS25575at 43.333 kb on - strand, within LU632_RS25575at 43.333 kb on - strand, within LU632_RS25575at 43.366 kb on + strand, within LU632_RS25575at 43.367 kb on - strand, within LU632_RS25575at 43.372 kb on + strand, within LU632_RS25575at 43.372 kb on + strand, within LU632_RS25575at 43.425 kb on + strand, within LU632_RS25575at 43.426 kb on - strand, within LU632_RS25575at 43.565 kb on + strand, within LU632_RS25575at 43.566 kb on - strand, within LU632_RS25575at 43.619 kb on + strand, within LU632_RS25575at 43.619 kb on + strand, within LU632_RS25575at 43.619 kb on + strand, within LU632_RS25575at 43.620 kb on - strand, within LU632_RS25575at 43.620 kb on - strand, within LU632_RS25575at 43.620 kb on - strand, within LU632_RS25575at 43.620 kb on - strand, within LU632_RS25575at 43.622 kb on + strand, within LU632_RS25575at 43.706 kb on + strand, within LU632_RS25575at 43.707 kb on - strand, within LU632_RS25575at 43.731 kb on + strand, within LU632_RS25575at 43.731 kb on + strand, within LU632_RS25575at 43.732 kb on - strand, within LU632_RS25575at 43.732 kb on - strand, within LU632_RS25575at 43.786 kb on + strand, within LU632_RS25575at 43.786 kb on + strand, within LU632_RS25575at 43.787 kb on - strand, within LU632_RS25575at 43.790 kb on + strand, within LU632_RS25575at 43.791 kb on - strand, within LU632_RS25575at 43.791 kb on - strand, within LU632_RS25575at 43.802 kb on + strand, within LU632_RS25575at 43.802 kb on + strand, within LU632_RS25575at 43.803 kb on - strand, within LU632_RS25575at 43.803 kb on - strand, within LU632_RS25575at 43.804 kb on + strand, within LU632_RS25575at 43.805 kb on - strand, within LU632_RS25575at 43.827 kb on + strand, within LU632_RS25575at 43.827 kb on + strand, within LU632_RS25575at 43.828 kb on - strand, within LU632_RS25575at 43.828 kb on - strand, within LU632_RS25575at 43.855 kb on + strand, within LU632_RS25575at 43.855 kb on + strand, within LU632_RS25575at 43.855 kb on + strand, within LU632_RS25575at 43.856 kb on - strand, within LU632_RS25575at 43.983 kb on - strand, within LU632_RS25575

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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42,692 + +1.6
42,704 - -0.2
42,771 - -0.4
42,805 - +0.7
42,809 + -2.2
42,809 + -0.1
42,810 - -1.5
42,850 + LU632_RS25570 0.23 +4.7
42,850 + LU632_RS25570 0.23 +4.3
42,851 - LU632_RS25570 0.24 +2.3
42,900 + LU632_RS25570 0.51 +4.4
42,901 - LU632_RS25570 0.52 +2.1
42,901 - LU632_RS25570 0.52 +3.2
42,920 - LU632_RS25570 0.62 +3.0
42,952 - LU632_RS25570 0.80 +0.3
43,057 - +0.4
43,097 + -2.7
43,098 - -2.0
43,098 - +0.1
43,225 + +0.4
43,225 + +1.9
43,226 - -3.4
43,243 + +0.3
43,281 - -1.0
43,307 - LU632_RS25575 0.11 +1.1
43,307 - LU632_RS25575 0.11 -2.3
43,307 - LU632_RS25575 0.11 +0.3
43,332 + LU632_RS25575 0.13 +0.4
43,332 + LU632_RS25575 0.13 -0.1
43,332 + LU632_RS25575 0.13 +0.4
43,333 - LU632_RS25575 0.13 -1.6
43,333 - LU632_RS25575 0.13 -2.3
43,366 + LU632_RS25575 0.16 +0.1
43,367 - LU632_RS25575 0.16 -2.6
43,372 + LU632_RS25575 0.16 +1.3
43,372 + LU632_RS25575 0.16 +0.6
43,425 + LU632_RS25575 0.20 +0.4
43,426 - LU632_RS25575 0.21 -0.7
43,565 + LU632_RS25575 0.32 -2.7
43,566 - LU632_RS25575 0.32 +0.2
43,619 + LU632_RS25575 0.37 +0.3
43,619 + LU632_RS25575 0.37 -2.3
43,619 + LU632_RS25575 0.37 +1.6
43,620 - LU632_RS25575 0.37 +0.5
43,620 - LU632_RS25575 0.37 -2.6
43,620 - LU632_RS25575 0.37 +0.3
43,620 - LU632_RS25575 0.37 +2.8
43,622 + LU632_RS25575 0.37 -1.1
43,706 + LU632_RS25575 0.44 -1.1
43,707 - LU632_RS25575 0.44 -0.2
43,731 + LU632_RS25575 0.46 +0.2
43,731 + LU632_RS25575 0.46 -2.9
43,732 - LU632_RS25575 0.46 +0.9
43,732 - LU632_RS25575 0.46 -1.6
43,786 + LU632_RS25575 0.50 -0.9
43,786 + LU632_RS25575 0.50 -2.5
43,787 - LU632_RS25575 0.50 -3.0
43,790 + LU632_RS25575 0.51 -2.9
43,791 - LU632_RS25575 0.51 +1.5
43,791 - LU632_RS25575 0.51 -0.5
43,802 + LU632_RS25575 0.52 -1.6
43,802 + LU632_RS25575 0.52 +1.8
43,803 - LU632_RS25575 0.52 +1.2
43,803 - LU632_RS25575 0.52 +2.8
43,804 + LU632_RS25575 0.52 +0.3
43,805 - LU632_RS25575 0.52 -0.5
43,827 + LU632_RS25575 0.54 -0.4
43,827 + LU632_RS25575 0.54 -2.0
43,828 - LU632_RS25575 0.54 -1.9
43,828 - LU632_RS25575 0.54 -0.7
43,855 + LU632_RS25575 0.56 -0.8
43,855 + LU632_RS25575 0.56 +0.8
43,855 + LU632_RS25575 0.56 -0.7
43,856 - LU632_RS25575 0.56 -2.0
43,983 - LU632_RS25575 0.67 -2.0

Or see this region's nucleotide sequence