Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25545

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25535 and LU632_RS25540 are separated by 48 nucleotidesLU632_RS25540 and LU632_RS25545 are separated by 135 nucleotidesLU632_RS25545 and LU632_RS25550 are separated by 194 nucleotidesLU632_RS25550 and LU632_RS25555 are separated by 3 nucleotides LU632_RS25535: LU632_RS25535 - MFS transporter, at 38,545 to 39,690 _RS25535 LU632_RS25540: LU632_RS25540 - DUF1349 domain-containing protein, at 39,739 to 40,317 _RS25540 LU632_RS25545: LU632_RS25545 - helix-turn-helix domain-containing protein, at 40,453 to 40,623 _RS25545 LU632_RS25550: LU632_RS25550 - Tn3 family transposase, at 40,818 to 41,318 _RS25550 LU632_RS25555: LU632_RS25555 - IS6 family transposase, at 41,322 to 41,429 _RS25555 Position (kb) 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 39.468 kb on + strand, within LU632_RS25535at 39.468 kb on + strand, within LU632_RS25535at 39.469 kb on - strand, within LU632_RS25535at 39.469 kb on - strand, within LU632_RS25535at 39.607 kb on + strandat 39.607 kb on + strandat 39.664 kb on + strandat 39.665 kb on - strandat 39.665 kb on - strandat 39.665 kb on - strandat 39.670 kb on - strandat 39.670 kb on - strandat 39.675 kb on + strandat 39.676 kb on - strandat 39.677 kb on + strandat 39.701 kb on + strandat 39.701 kb on + strandat 39.702 kb on - strandat 39.702 kb on - strandat 39.702 kb on - strandat 39.702 kb on - strandat 39.702 kb on - strandat 39.702 kb on - strandat 39.702 kb on - strandat 39.703 kb on + strandat 39.703 kb on - strandat 39.704 kb on - strandat 39.704 kb on - strandat 39.704 kb on - strandat 39.704 kb on - strandat 39.719 kb on + strandat 39.719 kb on + strandat 39.720 kb on - strandat 39.720 kb on - strandat 39.736 kb on + strandat 39.737 kb on - strandat 39.737 kb on - strandat 39.737 kb on - strandat 39.809 kb on + strand, within LU632_RS25540at 39.809 kb on - strand, within LU632_RS25540at 39.810 kb on - strand, within LU632_RS25540at 39.810 kb on - strand, within LU632_RS25540at 39.810 kb on - strand, within LU632_RS25540at 40.040 kb on + strand, within LU632_RS25540at 40.312 kb on - strandat 40.315 kb on + strandat 40.321 kb on + strandat 40.326 kb on + strandat 40.326 kb on + strandat 40.354 kb on + strandat 40.372 kb on + strandat 40.373 kb on - strandat 40.455 kb on - strandat 40.461 kb on + strandat 40.470 kb on - strand, within LU632_RS25545at 40.494 kb on + strand, within LU632_RS25545at 40.665 kb on + strandat 40.674 kb on + strandat 40.674 kb on + strandat 40.674 kb on + strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.696 kb on + strandat 40.696 kb on + strandat 40.696 kb on + strandat 40.697 kb on - strandat 40.713 kb on + strandat 40.713 kb on + strandat 40.719 kb on + strandat 40.719 kb on + strandat 40.719 kb on + strandat 40.720 kb on - strandat 40.730 kb on + strandat 40.760 kb on + strandat 40.761 kb on - strandat 40.768 kb on + strandat 40.768 kb on + strandat 40.769 kb on - strandat 40.769 kb on - strandat 40.782 kb on - strandat 40.852 kb on - strandat 40.901 kb on - strand, within LU632_RS25550at 40.912 kb on - strand, within LU632_RS25550at 40.912 kb on - strand, within LU632_RS25550at 40.913 kb on + strand, within LU632_RS25550at 40.913 kb on + strand, within LU632_RS25550at 40.914 kb on - strand, within LU632_RS25550at 40.914 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.922 kb on - strand, within LU632_RS25550at 40.922 kb on - strand, within LU632_RS25550at 41.204 kb on - strand, within LU632_RS25550at 41.204 kb on - strand, within LU632_RS25550at 41.374 kb on - strand, within LU632_RS25555at 41.428 kb on - strandat 41.454 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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39,468 + LU632_RS25535 0.81 -0.2
39,468 + LU632_RS25535 0.81 +0.3
39,469 - LU632_RS25535 0.81 +0.6
39,469 - LU632_RS25535 0.81 -0.6
39,607 + +2.9
39,607 + +2.2
39,664 + -1.2
39,665 - +1.7
39,665 - -0.7
39,665 - -0.3
39,670 - -1.3
39,670 - -0.8
39,675 + +1.5
39,676 - +0.4
39,677 + -2.6
39,701 + +0.2
39,701 + -1.3
39,702 - -3.2
39,702 - +0.3
39,702 - -3.0
39,702 - +1.8
39,702 - +0.4
39,702 - +0.9
39,702 - -0.7
39,703 + +0.3
39,703 - +0.6
39,704 - +0.6
39,704 - +0.7
39,704 - +1.0
39,704 - +2.5
39,719 + +0.3
39,719 + -0.7
39,720 - -2.0
39,720 - -2.9
39,736 + -0.7
39,737 - -2.5
39,737 - +0.5
39,737 - -0.7
39,809 + LU632_RS25540 0.12 +0.5
39,809 - LU632_RS25540 0.12 +0.1
39,810 - LU632_RS25540 0.12 -0.5
39,810 - LU632_RS25540 0.12 +0.4
39,810 - LU632_RS25540 0.12 +0.6
40,040 + LU632_RS25540 0.52 +0.1
40,312 - -0.2
40,315 + +0.8
40,321 + -0.9
40,326 + +0.2
40,326 + +1.6
40,354 + +0.8
40,372 + -0.5
40,373 - -1.4
40,455 - -0.2
40,461 + -1.7
40,470 - LU632_RS25545 0.10 -1.8
40,494 + LU632_RS25545 0.24 -1.7
40,665 + -1.3
40,674 + +0.9
40,674 + -1.7
40,674 + +0.1
40,675 - -0.2
40,675 - +0.2
40,675 - +0.3
40,675 - -2.3
40,675 - +1.3
40,675 - -2.4
40,675 - +1.1
40,675 - -2.5
40,696 + +1.3
40,696 + -0.4
40,696 + -1.1
40,697 - -2.0
40,713 + +0.7
40,713 + -1.1
40,719 + -1.1
40,719 + +0.6
40,719 + +0.3
40,720 - +2.8
40,730 + -0.7
40,760 + -0.1
40,761 - +0.7
40,768 + +0.7
40,768 + -1.7
40,769 - +2.8
40,769 - -0.8
40,782 - +0.0
40,852 - -0.5
40,901 - LU632_RS25550 0.17 -0.3
40,912 - LU632_RS25550 0.19 -1.4
40,912 - LU632_RS25550 0.19 +0.2
40,913 + LU632_RS25550 0.19 +2.1
40,913 + LU632_RS25550 0.19 +0.3
40,914 - LU632_RS25550 0.19 +4.5
40,914 - LU632_RS25550 0.19 -0.7
40,920 - LU632_RS25550 0.20 -2.7
40,920 - LU632_RS25550 0.20 +0.2
40,920 - LU632_RS25550 0.20 -0.9
40,920 - LU632_RS25550 0.20 -1.5
40,920 - LU632_RS25550 0.20 -0.7
40,920 - LU632_RS25550 0.20 -0.1
40,922 - LU632_RS25550 0.21 -3.0
40,922 - LU632_RS25550 0.21 -2.5
41,204 - LU632_RS25550 0.77 -2.3
41,204 - LU632_RS25550 0.77 -1.3
41,374 - LU632_RS25555 0.48 +1.0
41,428 - +2.7
41,454 - -0.2

Or see this region's nucleotide sequence