Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25410

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
16,165	+		LU632_RS25400	0.70	-0.9
16,180	-		LU632_RS25400	0.70	-0.1
16,180	-		LU632_RS25400	0.70	-2.0
16,195	+		LU632_RS25400	0.71	-3.8
16,207	+		LU632_RS25400	0.71	+2.4
16,219	+		LU632_RS25400	0.72	-2.0
16,220	-		LU632_RS25400	0.72	+0.9
16,231	+		LU632_RS25400	0.73	+0.5
16,232	-		LU632_RS25400	0.73	+0.8
16,232	-		LU632_RS25400	0.73	+0.4
16,237	+		LU632_RS25400	0.73	-0.5
16,250	-		LU632_RS25400	0.73	-4.1
16,250	-		LU632_RS25400	0.73	+0.3
16,293	+		LU632_RS25400	0.75	-0.3
16,302	-		LU632_RS25400	0.76	-3.8
16,310	+		LU632_RS25400	0.76	-0.1
16,334	-		LU632_RS25400	0.77	-1.6
16,343	+		LU632_RS25400	0.78	+0.5
16,344	-		LU632_RS25400	0.78	+3.1
16,373	+		LU632_RS25400	0.79	-0.3
16,373	+		LU632_RS25400	0.79	-0.3
16,374	-		LU632_RS25400	0.79	-0.2
16,374	-		LU632_RS25400	0.79	+0.3
16,374	-		LU632_RS25400	0.79	+0.1
16,374	-		LU632_RS25400	0.79	-3.8
16,374	-		LU632_RS25400	0.79	-2.7
16,374	-		LU632_RS25400	0.79	+0.3
16,374	-		LU632_RS25400	0.79	+1.5
16,374	-		LU632_RS25400	0.79	+0.3
16,374	-		LU632_RS25400	0.79	+3.0
16,375	+		LU632_RS25400	0.79	-1.2
16,375	+		LU632_RS25400	0.79	+0.4
16,375	+		LU632_RS25400	0.79	+0.6
16,375	+		LU632_RS25400	0.79	-0.0
16,375	+		LU632_RS25400	0.79	-0.3
16,375	+		LU632_RS25400	0.79	-0.9
16,375	+		LU632_RS25400	0.79	+0.8
16,376	-		LU632_RS25400	0.79	-0.3
16,376	-		LU632_RS25400	0.79	+0.3
16,376	-		LU632_RS25400	0.79	+0.3
16,376	-		LU632_RS25400	0.79	+3.3
16,376	-		LU632_RS25400	0.79	+1.2
16,376	-		LU632_RS25400	0.79	+0.3
16,376	-		LU632_RS25400	0.79	-2.4
16,376	-		LU632_RS25400	0.79	-0.1
16,376	-		LU632_RS25400	0.79	+1.1
16,376	-		LU632_RS25400	0.79	-2.3
16,376	-		LU632_RS25400	0.79	+0.6
16,376	-		LU632_RS25400	0.79	-2.5
16,379	+		LU632_RS25400	0.79	-3.3
16,391	+		LU632_RS25400	0.80	+0.5
16,392	-		LU632_RS25400	0.80	+1.9
16,410	+		LU632_RS25400	0.81	+0.5
16,411	-		LU632_RS25400	0.81	+0.6
16,411	-		LU632_RS25400	0.81	-2.0
16,411	-		LU632_RS25400	0.81	+1.3
16,417	-		LU632_RS25400	0.81	-1.7
16,419	-		LU632_RS25400	0.81	-0.9
16,420	+		LU632_RS25400	0.81	-1.1
16,420	+		LU632_RS25400	0.81	-2.7
16,421	-		LU632_RS25400	0.81	-1.1
16,421	-		LU632_RS25400	0.81	+0.7
16,421	-		LU632_RS25400	0.81	+1.2
16,421	-		LU632_RS25400	0.81	-1.7
16,421	-		LU632_RS25400	0.81	+2.9
16,514	+		LU632_RS25400	0.86	-0.7
16,515	-		LU632_RS25400	0.86	+0.0
16,515	-		LU632_RS25400	0.86	+0.2
16,516	+		LU632_RS25400	0.86	+2.7
16,516	+		LU632_RS25400	0.86	-1.3
16,516	+		LU632_RS25400	0.86	-0.7
16,516	+		LU632_RS25400	0.86	-0.5
16,516	+		LU632_RS25400	0.86	-2.0
16,522	+		LU632_RS25400	0.86	-0.2
16,576	+		LU632_RS25400	0.88	+2.5
16,576	+		LU632_RS25400	0.88	+3.1
16,576	+		LU632_RS25400	0.88	+0.3
16,576	+		LU632_RS25400	0.88	-3.2
16,576	+		LU632_RS25400	0.88	-0.6
16,576	+		LU632_RS25400	0.88	-3.6
16,577	-		LU632_RS25400	0.88	+1.5
16,595	-		LU632_RS25400	0.89	-0.7
16,596	+		LU632_RS25400	0.89	-0.5
16,596	+		LU632_RS25400	0.89	-2.7
16,596	+		LU632_RS25400	0.89	+2.1
16,596	+		LU632_RS25400	0.89	+0.2
16,596	+		LU632_RS25400	0.89	-2.7
16,596	+		LU632_RS25400	0.89	-1.5
16,597	-		LU632_RS25400	0.89	-0.6
16,597	-		LU632_RS25400	0.89	+1.4
16,610	+				-0.5
16,611	+				-1.5
16,647	+				-1.0
16,659	+				+1.8
16,660	-				-3.5
16,660	-				-0.1
16,660	-				+0.0
16,675	+				-3.0
16,675	+				-1.3
16,676	-				-4.2
16,676	-				-0.9
16,794	-				-3.2
16,824	+				-1.9
16,824	+				-3.4
17,159	+				-2.3
17,159	+				+0.3
17,159	+				+0.2
17,159	+				+0.8
17,159	+				+0.6
17,159	+				+0.8
17,159	+				+1.3
17,159	+				-1.1
17,160	-				-3.2
17,160	-				+0.9
17,160	-				+0.2
17,160	-				-1.7
17,160	-				+2.4
17,160	-				-2.5
17,160	-				-0.2
17,164	-				+0.3
17,164	-				+1.4
17,253	-		LU632_RS25410	0.31	-0.5
17,278	-		LU632_RS25410	0.40	+2.3
17,294	+		LU632_RS25410	0.45	+5.9
17,316	+		LU632_RS25410	0.53	+0.1
17,317	-		LU632_RS25410	0.53	+0.9
17,362	-		LU632_RS25410	0.69	-0.4
17,424	+				-0.4
17,425	-				-0.5
17,464	-				-0.0
17,464	-				-1.1
17,467	+				+1.4
17,467	+				+1.6
17,467	+				-0.7
17,467	+				+0.3
17,467	+				+0.2
17,467	+				-0.7
17,467	+				-0.0
17,467	+				-0.1
17,468	-				+0.8
17,468	-				+0.3
17,468	-				-1.8
17,468	-				-3.7
17,468	-				+0.3
17,468	-				+0.9
17,468	-				-1.6
17,468	-				-1.0
17,488	+				+0.3
17,493	-				+0.5
17,512	-				+1.0
17,512	-				+2.3
17,512	-				+0.2
17,606	+	excA	LU632_RS25415	0.20	+1.2
17,607	-	excA	LU632_RS25415	0.20	+0.1
17,610	+	excA	LU632_RS25415	0.21	+0.5
17,646	+	excA	LU632_RS25415	0.26	-0.3
17,647	-	excA	LU632_RS25415	0.26	-0.4
17,649	+	excA	LU632_RS25415	0.27	+0.3
17,691	-	excA	LU632_RS25415	0.33	+0.5
17,691	-	excA	LU632_RS25415	0.33	-3.2
17,698	-	excA	LU632_RS25415	0.34	-1.6
17,698	-	excA	LU632_RS25415	0.34	-1.2
17,698	-	excA	LU632_RS25415	0.34	-1.8
17,698	-	excA	LU632_RS25415	0.34	-0.4
17,698	-	excA	LU632_RS25415	0.34	+0.5
17,698	-	excA	LU632_RS25415	0.34	-1.8
17,698	-	excA	LU632_RS25415	0.34	+0.0
17,698	-	excA	LU632_RS25415	0.34	-3.3
17,699	+	excA	LU632_RS25415	0.34	+3.5
17,699	+	excA	LU632_RS25415	0.34	+0.2
17,735	+	excA	LU632_RS25415	0.39	-0.2
17,735	+	excA	LU632_RS25415	0.39	+0.7
17,804	+	excA	LU632_RS25415	0.49	-0.8
17,808	+	excA	LU632_RS25415	0.50	+0.0
17,840	+	excA	LU632_RS25415	0.55	-2.2
17,840	+	excA	LU632_RS25415	0.55	+0.7
17,860	+	excA	LU632_RS25415	0.58	+0.4
17,860	+	excA	LU632_RS25415	0.58	-2.0
17,863	+	excA	LU632_RS25415	0.58	-1.0
17,864	-	excA	LU632_RS25415	0.58	+0.6
17,892	+	excA	LU632_RS25415	0.62	-2.5
17,916	-	excA	LU632_RS25415	0.66	+1.9
17,916	-	excA	LU632_RS25415	0.66	+0.4
17,961	-	excA	LU632_RS25415	0.72	+0.2
17,961	-	excA	LU632_RS25415	0.72	+0.2
17,971	-	excA	LU632_RS25415	0.74	+2.9
17,985	+	excA	LU632_RS25415	0.76	+0.7
17,985	+	excA	LU632_RS25415	0.76	+1.3
17,985	+	excA	LU632_RS25415	0.76	+0.4
17,986	-	excA	LU632_RS25415	0.76	-0.5
17,989	-	excA	LU632_RS25415	0.77	-3.0
17,989	-	excA	LU632_RS25415	0.77	-2.7
17,989	-	excA	LU632_RS25415	0.77	+1.9
17,989	-	excA	LU632_RS25415	0.77	+1.0
17,989	-	excA	LU632_RS25415	0.77	-0.1
17,992	+	excA	LU632_RS25415	0.77	+1.1
18,020	+	excA	LU632_RS25415	0.81	-1.5
18,037	+	excA	LU632_RS25415	0.84	+0.2
18,037	+	excA	LU632_RS25415	0.84	-1.6
18,038	-	excA	LU632_RS25415	0.84	-3.9
18,059	+	excA	LU632_RS25415	0.87	-0.2
18,081	-				-0.5
18,215	+				+0.4
18,215	+				+0.4
18,215	+				+2.0
18,215	+				-0.4
18,215	+				-0.5
18,215	+				+0.2
18,216	-				-0.3
18,216	-				-1.3
18,218	+				-1.3
18,374	-		LU632_RS25420	0.11	+0.7
18,423	-		LU632_RS25420	0.15	+3.1
18,426	-		LU632_RS25420	0.15	-0.3