Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24990 and LU632_RS24995 are separated by 40 nucleotides LU632_RS24995 and LU632_RS25000 are separated by 261 nucleotides LU632_RS25000 and LU632_RS25005 are separated by 83 nucleotides LU632_RS25005 and LU632_RS25010 overlap by 8 nucleotides LU632_RS25010 and LU632_RS25015 overlap by 4 nucleotides
LU632_RS24990: LU632_RS24990 - AAA family ATPase, at 4,766,688 to 4,767,629
_RS24990
LU632_RS24995: LU632_RS24995 - hypothetical protein, at 4,767,670 to 4,767,909
_RS24995
LU632_RS25000: LU632_RS25000 - DUF3164 family protein, at 4,768,171 to 4,768,788
_RS25000
LU632_RS25005: LU632_RS25005 - hypothetical protein, at 4,768,872 to 4,769,138
_RS25005
LU632_RS25010: LU632_RS25010 - hypothetical protein, at 4,769,131 to 4,769,613
_RS25010
LU632_RS25015: LU632_RS25015 - hypothetical protein, at 4,769,610 to 4,770,050
_RS25015
Position (kb) 4768
4769 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4767.175 kb on - strand, within LU632_RS24990 at 4767.218 kb on + strand, within LU632_RS24990 at 4767.219 kb on - strand, within LU632_RS24990 at 4767.324 kb on + strand, within LU632_RS24990 at 4767.324 kb on + strand, within LU632_RS24990 at 4767.324 kb on + strand, within LU632_RS24990 at 4767.325 kb on - strand, within LU632_RS24990 at 4767.325 kb on - strand, within LU632_RS24990 at 4767.325 kb on - strand, within LU632_RS24990 at 4767.523 kb on - strand, within LU632_RS24990 at 4767.523 kb on - strand, within LU632_RS24990 at 4767.585 kb on - strand at 4767.588 kb on - strand at 4767.619 kb on - strand at 4767.621 kb on - strand at 4767.621 kb on - strand at 4767.621 kb on - strand at 4767.652 kb on - strand at 4767.794 kb on + strand, within LU632_RS24995 at 4767.831 kb on + strand, within LU632_RS24995 at 4767.844 kb on - strand, within LU632_RS24995 at 4767.847 kb on - strand, within LU632_RS24995 at 4767.898 kb on - strand at 4767.937 kb on - strand at 4767.997 kb on - strand at 4768.049 kb on - strand at 4768.059 kb on - strand at 4768.059 kb on - strand at 4768.107 kb on - strand at 4768.210 kb on - strand at 4768.503 kb on + strand, within LU632_RS25000 at 4768.525 kb on - strand, within LU632_RS25000 at 4768.645 kb on - strand, within LU632_RS25000 at 4768.729 kb on + strand at 4768.749 kb on + strand at 4768.750 kb on - strand at 4768.753 kb on + strand at 4768.754 kb on - strand at 4768.793 kb on + strand at 4768.802 kb on - strand at 4768.802 kb on - strand at 4768.851 kb on - strand at 4768.888 kb on + strand at 4768.889 kb on - strand at 4768.974 kb on - strand, within LU632_RS25005 at 4769.093 kb on + strand, within LU632_RS25005 at 4769.093 kb on + strand, within LU632_RS25005 at 4769.177 kb on - strand at 4769.250 kb on + strand, within LU632_RS25010 at 4769.268 kb on + strand, within LU632_RS25010 at 4769.268 kb on + strand, within LU632_RS25010 at 4769.426 kb on + strand, within LU632_RS25010 at 4769.427 kb on - strand, within LU632_RS25010 at 4769.526 kb on + strand, within LU632_RS25010 at 4769.526 kb on + strand, within LU632_RS25010 at 4769.527 kb on - strand, within LU632_RS25010 at 4769.533 kb on - strand, within LU632_RS25010 at 4769.533 kb on - strand, within LU632_RS25010 at 4769.533 kb on - strand, within LU632_RS25010 at 4769.614 kb on + strand at 4769.614 kb on + strand at 4769.614 kb on + strand at 4769.615 kb on - strand at 4769.624 kb on + strand at 4769.625 kb on - strand at 4769.760 kb on + strand, within LU632_RS25015 at 4769.769 kb on - strand, within LU632_RS25015
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 4,767,175 - LU632_RS24990 0.52 -2.2 4,767,218 + LU632_RS24990 0.56 +1.2 4,767,219 - LU632_RS24990 0.56 -0.6 4,767,324 + LU632_RS24990 0.68 -1.0 4,767,324 + LU632_RS24990 0.68 -1.1 4,767,324 + LU632_RS24990 0.68 -1.7 4,767,325 - LU632_RS24990 0.68 +2.0 4,767,325 - LU632_RS24990 0.68 -0.1 4,767,325 - LU632_RS24990 0.68 -0.1 4,767,523 - LU632_RS24990 0.89 +2.2 4,767,523 - LU632_RS24990 0.89 +1.6 4,767,585 - +1.7 4,767,588 - +0.9 4,767,619 - +1.1 4,767,621 - -0.0 4,767,621 - -1.4 4,767,621 - +0.2 4,767,652 - -0.7 4,767,794 + LU632_RS24995 0.52 +0.2 4,767,831 + LU632_RS24995 0.67 -0.4 4,767,844 - LU632_RS24995 0.72 -0.2 4,767,847 - LU632_RS24995 0.74 +1.4 4,767,898 - +1.8 4,767,937 - -0.3 4,767,997 - -1.3 4,768,049 - -1.1 4,768,059 - -1.1 4,768,059 - +1.0 4,768,107 - +0.4 4,768,210 - -1.4 4,768,503 + LU632_RS25000 0.54 -1.9 4,768,525 - LU632_RS25000 0.57 -0.2 4,768,645 - LU632_RS25000 0.77 -3.0 4,768,729 + +1.5 4,768,749 + -0.2 4,768,750 - -0.1 4,768,753 + +0.7 4,768,754 - +1.6 4,768,793 + +0.1 4,768,802 - +1.5 4,768,802 - +2.2 4,768,851 - +1.5 4,768,888 + -0.4 4,768,889 - -1.9 4,768,974 - LU632_RS25005 0.38 +0.2 4,769,093 + LU632_RS25005 0.83 -2.0 4,769,093 + LU632_RS25005 0.83 +0.8 4,769,177 - -0.3 4,769,250 + LU632_RS25010 0.25 -2.6 4,769,268 + LU632_RS25010 0.28 +1.1 4,769,268 + LU632_RS25010 0.28 +0.1 4,769,426 + LU632_RS25010 0.61 +1.2 4,769,427 - LU632_RS25010 0.61 +0.5 4,769,526 + LU632_RS25010 0.82 -0.4 4,769,526 + LU632_RS25010 0.82 -1.1 4,769,527 - LU632_RS25010 0.82 +0.8 4,769,533 - LU632_RS25010 0.83 +0.9 4,769,533 - LU632_RS25010 0.83 -0.4 4,769,533 - LU632_RS25010 0.83 -1.2 4,769,614 + +0.6 4,769,614 + +0.9 4,769,614 + +0.7 4,769,615 - +2.6 4,769,624 + -1.9 4,769,625 - -1.1 4,769,760 + LU632_RS25015 0.34 +1.2 4,769,769 - LU632_RS25015 0.36 +1.4
Or see this region's nucleotide sequence