Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25000

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS24990 and LU632_RS24995 are separated by 40 nucleotidesLU632_RS24995 and LU632_RS25000 are separated by 261 nucleotidesLU632_RS25000 and LU632_RS25005 are separated by 83 nucleotidesLU632_RS25005 and LU632_RS25010 overlap by 8 nucleotidesLU632_RS25010 and LU632_RS25015 overlap by 4 nucleotides LU632_RS24990: LU632_RS24990 - AAA family ATPase, at 4,766,688 to 4,767,629 _RS24990 LU632_RS24995: LU632_RS24995 - hypothetical protein, at 4,767,670 to 4,767,909 _RS24995 LU632_RS25000: LU632_RS25000 - DUF3164 family protein, at 4,768,171 to 4,768,788 _RS25000 LU632_RS25005: LU632_RS25005 - hypothetical protein, at 4,768,872 to 4,769,138 _RS25005 LU632_RS25010: LU632_RS25010 - hypothetical protein, at 4,769,131 to 4,769,613 _RS25010 LU632_RS25015: LU632_RS25015 - hypothetical protein, at 4,769,610 to 4,770,050 _RS25015 Position (kb) 4768 4769Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4767.175 kb on - strand, within LU632_RS24990at 4767.218 kb on + strand, within LU632_RS24990at 4767.219 kb on - strand, within LU632_RS24990at 4767.324 kb on + strand, within LU632_RS24990at 4767.324 kb on + strand, within LU632_RS24990at 4767.324 kb on + strand, within LU632_RS24990at 4767.325 kb on - strand, within LU632_RS24990at 4767.325 kb on - strand, within LU632_RS24990at 4767.325 kb on - strand, within LU632_RS24990at 4767.523 kb on - strand, within LU632_RS24990at 4767.523 kb on - strand, within LU632_RS24990at 4767.585 kb on - strandat 4767.588 kb on - strandat 4767.619 kb on - strandat 4767.621 kb on - strandat 4767.621 kb on - strandat 4767.621 kb on - strandat 4767.652 kb on - strandat 4767.794 kb on + strand, within LU632_RS24995at 4767.831 kb on + strand, within LU632_RS24995at 4767.844 kb on - strand, within LU632_RS24995at 4767.847 kb on - strand, within LU632_RS24995at 4767.898 kb on - strandat 4767.937 kb on - strandat 4767.997 kb on - strandat 4768.049 kb on - strandat 4768.059 kb on - strandat 4768.059 kb on - strandat 4768.107 kb on - strandat 4768.210 kb on - strandat 4768.503 kb on + strand, within LU632_RS25000at 4768.525 kb on - strand, within LU632_RS25000at 4768.645 kb on - strand, within LU632_RS25000at 4768.729 kb on + strandat 4768.749 kb on + strandat 4768.750 kb on - strandat 4768.753 kb on + strandat 4768.754 kb on - strandat 4768.793 kb on + strandat 4768.802 kb on - strandat 4768.802 kb on - strandat 4768.851 kb on - strandat 4768.888 kb on + strandat 4768.889 kb on - strandat 4768.974 kb on - strand, within LU632_RS25005at 4769.093 kb on + strand, within LU632_RS25005at 4769.093 kb on + strand, within LU632_RS25005at 4769.177 kb on - strandat 4769.250 kb on + strand, within LU632_RS25010at 4769.268 kb on + strand, within LU632_RS25010at 4769.268 kb on + strand, within LU632_RS25010at 4769.426 kb on + strand, within LU632_RS25010at 4769.427 kb on - strand, within LU632_RS25010at 4769.526 kb on + strand, within LU632_RS25010at 4769.526 kb on + strand, within LU632_RS25010at 4769.527 kb on - strand, within LU632_RS25010at 4769.533 kb on - strand, within LU632_RS25010at 4769.533 kb on - strand, within LU632_RS25010at 4769.533 kb on - strand, within LU632_RS25010at 4769.614 kb on + strandat 4769.614 kb on + strandat 4769.614 kb on + strandat 4769.615 kb on - strandat 4769.624 kb on + strandat 4769.625 kb on - strandat 4769.760 kb on + strand, within LU632_RS25015at 4769.769 kb on - strand, within LU632_RS25015

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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4,767,175 - LU632_RS24990 0.52 -2.2
4,767,218 + LU632_RS24990 0.56 +1.2
4,767,219 - LU632_RS24990 0.56 -0.6
4,767,324 + LU632_RS24990 0.68 -1.0
4,767,324 + LU632_RS24990 0.68 -1.1
4,767,324 + LU632_RS24990 0.68 -1.7
4,767,325 - LU632_RS24990 0.68 +2.0
4,767,325 - LU632_RS24990 0.68 -0.1
4,767,325 - LU632_RS24990 0.68 -0.1
4,767,523 - LU632_RS24990 0.89 +2.2
4,767,523 - LU632_RS24990 0.89 +1.6
4,767,585 - +1.7
4,767,588 - +0.9
4,767,619 - +1.1
4,767,621 - -0.0
4,767,621 - -1.4
4,767,621 - +0.2
4,767,652 - -0.7
4,767,794 + LU632_RS24995 0.52 +0.2
4,767,831 + LU632_RS24995 0.67 -0.4
4,767,844 - LU632_RS24995 0.72 -0.2
4,767,847 - LU632_RS24995 0.74 +1.4
4,767,898 - +1.8
4,767,937 - -0.3
4,767,997 - -1.3
4,768,049 - -1.1
4,768,059 - -1.1
4,768,059 - +1.0
4,768,107 - +0.4
4,768,210 - -1.4
4,768,503 + LU632_RS25000 0.54 -1.9
4,768,525 - LU632_RS25000 0.57 -0.2
4,768,645 - LU632_RS25000 0.77 -3.0
4,768,729 + +1.5
4,768,749 + -0.2
4,768,750 - -0.1
4,768,753 + +0.7
4,768,754 - +1.6
4,768,793 + +0.1
4,768,802 - +1.5
4,768,802 - +2.2
4,768,851 - +1.5
4,768,888 + -0.4
4,768,889 - -1.9
4,768,974 - LU632_RS25005 0.38 +0.2
4,769,093 + LU632_RS25005 0.83 -2.0
4,769,093 + LU632_RS25005 0.83 +0.8
4,769,177 - -0.3
4,769,250 + LU632_RS25010 0.25 -2.6
4,769,268 + LU632_RS25010 0.28 +1.1
4,769,268 + LU632_RS25010 0.28 +0.1
4,769,426 + LU632_RS25010 0.61 +1.2
4,769,427 - LU632_RS25010 0.61 +0.5
4,769,526 + LU632_RS25010 0.82 -0.4
4,769,526 + LU632_RS25010 0.82 -1.1
4,769,527 - LU632_RS25010 0.82 +0.8
4,769,533 - LU632_RS25010 0.83 +0.9
4,769,533 - LU632_RS25010 0.83 -0.4
4,769,533 - LU632_RS25010 0.83 -1.2
4,769,614 + +0.6
4,769,614 + +0.9
4,769,614 + +0.7
4,769,615 - +2.6
4,769,624 + -1.9
4,769,625 - -1.1
4,769,760 + LU632_RS25015 0.34 +1.2
4,769,769 - LU632_RS25015 0.36 +1.4

Or see this region's nucleotide sequence