Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pstC and pstA overlap by 4 nucleotides pstA and pstB are separated by 43 nucleotides pstB and phoU are separated by 17 nucleotides
LU632_RS24885: pstC - phosphate ABC transporter permease PstC, at 4,747,919 to 4,748,881
pstC
LU632_RS24890: pstA - phosphate ABC transporter permease PstA, at 4,748,878 to 4,749,765
pstA
LU632_RS24895: pstB - phosphate ABC transporter ATP-binding protein PstB, at 4,749,809 to 4,750,579
pstB
LU632_RS24900: phoU - phosphate signaling complex protein PhoU, at 4,750,597 to 4,751,334
phoU
Position (kb) 4748
4749
4750 Strain fitness (log2 ratio) -2
-1
0
1 at 4748.152 kb on + strand, within pstC at 4748.153 kb on - strand, within pstC at 4748.204 kb on - strand, within pstC at 4748.302 kb on + strand, within pstC at 4748.343 kb on - strand, within pstC at 4748.377 kb on + strand, within pstC at 4748.378 kb on - strand, within pstC at 4748.659 kb on + strand, within pstC at 4748.659 kb on + strand, within pstC at 4748.663 kb on - strand, within pstC at 4748.720 kb on - strand, within pstC at 4748.794 kb on + strand at 4748.929 kb on - strand at 4748.952 kb on + strand at 4749.035 kb on + strand, within pstA at 4749.276 kb on + strand, within pstA at 4749.276 kb on + strand, within pstA at 4749.277 kb on - strand, within pstA at 4749.298 kb on + strand, within pstA at 4749.440 kb on - strand, within pstA at 4749.469 kb on - strand, within pstA at 4749.469 kb on - strand, within pstA at 4749.726 kb on + strand at 4749.727 kb on - strand at 4749.763 kb on + strand at 4749.773 kb on - strand at 4749.791 kb on - strand at 4749.889 kb on + strand, within pstB at 4749.902 kb on - strand, within pstB at 4749.904 kb on + strand, within pstB at 4750.061 kb on - strand, within pstB at 4750.123 kb on + strand, within pstB at 4750.135 kb on + strand, within pstB at 4750.240 kb on + strand, within pstB at 4750.261 kb on + strand, within pstB at 4750.261 kb on + strand, within pstB at 4750.389 kb on + strand, within pstB at 4750.389 kb on + strand, within pstB at 4750.438 kb on + strand, within pstB at 4750.439 kb on - strand, within pstB at 4750.478 kb on - strand, within pstB at 4750.556 kb on + strand at 4750.556 kb on + strand at 4750.556 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 4,748,152 + pstC LU632_RS24885 0.24 +1.2 4,748,153 - pstC LU632_RS24885 0.24 -1.4 4,748,204 - pstC LU632_RS24885 0.30 -2.1 4,748,302 + pstC LU632_RS24885 0.40 +0.2 4,748,343 - pstC LU632_RS24885 0.44 -1.1 4,748,377 + pstC LU632_RS24885 0.48 -0.4 4,748,378 - pstC LU632_RS24885 0.48 -0.4 4,748,659 + pstC LU632_RS24885 0.77 -2.1 4,748,659 + pstC LU632_RS24885 0.77 +1.2 4,748,663 - pstC LU632_RS24885 0.77 -0.4 4,748,720 - pstC LU632_RS24885 0.83 +0.2 4,748,794 + -0.8 4,748,929 - +1.2 4,748,952 + -1.6 4,749,035 + pstA LU632_RS24890 0.18 -0.4 4,749,276 + pstA LU632_RS24890 0.45 +0.2 4,749,276 + pstA LU632_RS24890 0.45 -0.4 4,749,277 - pstA LU632_RS24890 0.45 -1.4 4,749,298 + pstA LU632_RS24890 0.47 +0.2 4,749,440 - pstA LU632_RS24890 0.63 -1.4 4,749,469 - pstA LU632_RS24890 0.67 -1.6 4,749,469 - pstA LU632_RS24890 0.67 -1.4 4,749,726 + -0.4 4,749,727 - -2.1 4,749,763 + +0.2 4,749,773 - -1.8 4,749,791 - -2.2 4,749,889 + pstB LU632_RS24895 0.10 -0.8 4,749,902 - pstB LU632_RS24895 0.12 -1.9 4,749,904 + pstB LU632_RS24895 0.12 -1.1 4,750,061 - pstB LU632_RS24895 0.33 -1.8 4,750,123 + pstB LU632_RS24895 0.41 +1.2 4,750,135 + pstB LU632_RS24895 0.42 +1.2 4,750,240 + pstB LU632_RS24895 0.56 -1.1 4,750,261 + pstB LU632_RS24895 0.59 +1.2 4,750,261 + pstB LU632_RS24895 0.59 -0.4 4,750,389 + pstB LU632_RS24895 0.75 +1.2 4,750,389 + pstB LU632_RS24895 0.75 +0.2 4,750,438 + pstB LU632_RS24895 0.82 +0.2 4,750,439 - pstB LU632_RS24895 0.82 -0.4 4,750,478 - pstB LU632_RS24895 0.87 +1.2 4,750,556 + +0.2 4,750,556 + -0.4 4,750,556 + -1.1
Or see this region's nucleotide sequence