Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24435

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
4,662,204	+				+2.5
4,662,204	+				+1.4
4,662,205	-				-0.0
4,662,205	-				-2.2
4,662,412	+		LU632_RS24435	0.22	+1.9
4,662,492	+		LU632_RS24435	0.30	+0.0
4,662,515	+		LU632_RS24435	0.32	-1.6
4,662,515	+		LU632_RS24435	0.32	+4.9
4,662,570	+		LU632_RS24435	0.38	+4.5
4,662,570	+		LU632_RS24435	0.38	-1.9
4,662,570	-		LU632_RS24435	0.38	+0.6
4,662,622	+		LU632_RS24435	0.43	-1.8
4,663,077	-				-1.9
4,663,077	-				-0.3
4,663,272	+				-1.8
4,663,280	+				+0.6
4,663,280	+				-1.6
4,663,280	+				+1.5
4,663,280	+				-1.1
4,663,282	+				-1.1
4,663,282	+				-0.5
4,663,282	+				-0.7
4,663,333	+				-2.2
4,663,343	+		LU632_RS24440	0.10	-2.3
4,663,343	+		LU632_RS24440	0.10	+0.7
4,663,343	+		LU632_RS24440	0.10	+0.2
4,663,343	+		LU632_RS24440	0.10	-1.3
4,663,344	-		LU632_RS24440	0.10	-1.1
4,663,344	-		LU632_RS24440	0.10	+0.4
4,663,344	-		LU632_RS24440	0.10	+1.8
4,663,344	-		LU632_RS24440	0.10	+1.3
4,663,344	-		LU632_RS24440	0.10	-1.1
4,663,344	-		LU632_RS24440	0.10	+1.2
4,663,344	-		LU632_RS24440	0.10	+0.3
4,663,391	+		LU632_RS24440	0.22	+0.6
4,663,392	-		LU632_RS24440	0.23	+0.2
4,663,392	-		LU632_RS24440	0.23	+3.7
4,663,392	-		LU632_RS24440	0.23	+3.8
4,663,475	+		LU632_RS24440	0.44	+1.0
4,663,570	+		LU632_RS24440	0.68	-1.8
4,663,652	-		LU632_RS24440	0.89	-1.3
4,663,652	-		LU632_RS24440	0.89	-1.1
4,663,652	-		LU632_RS24440	0.89	+0.2
4,663,719	+				+1.4
4,663,727	+				-3.0
4,663,727	+				+1.9
4,663,735	+				+0.5
4,663,779	-				+1.2
4,663,781	+				-0.2
4,663,781	+				-3.5
4,663,781	+				-0.1
4,663,781	+				+1.5
4,663,782	-				-1.2
4,663,784	-				+1.2
4,663,784	-				+2.0
4,663,784	-				-2.5
4,663,793	+				-0.7
4,663,793	+				-1.8
4,663,794	-				-0.8
4,663,794	-				+1.0
4,663,817	-				+1.1
4,663,852	+				-0.9
4,663,853	-				-0.4
4,663,853	-				+4.4
4,663,889	+				+0.6
4,663,889	+				-1.9
4,663,938	-				-1.3
4,664,041	+		LU632_RS24445	0.29	-0.5
4,664,041	+		LU632_RS24445	0.29	+1.2
4,664,094	+		LU632_RS24445	0.44	-1.4