Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wzzE and wecA are separated by 54 nucleotides wecA and rho are separated by 314 nucleotides
LU632_RS24245: wzzE - ECA polysaccharide chain length modulation protein, at 4,624,393 to 4,625,421
wzzE
LU632_RS24250: wecA - UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase, at 4,625,476 to 4,626,555
wecA
LU632_RS24255: rho - transcription termination factor Rho, at 4,626,870 to 4,628,129
rho
Position (kb) 4625
4626
4627 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4624.595 kb on + strand, within wzzE at 4624.688 kb on - strand, within wzzE at 4624.705 kb on - strand, within wzzE at 4624.781 kb on + strand, within wzzE at 4624.782 kb on - strand, within wzzE at 4624.907 kb on + strand, within wzzE at 4625.002 kb on + strand, within wzzE at 4625.003 kb on - strand, within wzzE at 4625.027 kb on - strand, within wzzE at 4625.027 kb on - strand, within wzzE at 4625.032 kb on - strand, within wzzE at 4625.032 kb on - strand, within wzzE at 4625.032 kb on - strand, within wzzE at 4625.070 kb on - strand, within wzzE at 4625.073 kb on - strand, within wzzE at 4625.172 kb on + strand, within wzzE at 4625.172 kb on + strand, within wzzE at 4625.173 kb on - strand, within wzzE at 4625.173 kb on - strand, within wzzE at 4625.173 kb on - strand, within wzzE at 4625.173 kb on - strand, within wzzE at 4625.181 kb on + strand, within wzzE at 4625.200 kb on - strand, within wzzE at 4625.222 kb on + strand, within wzzE at 4625.238 kb on + strand, within wzzE at 4625.239 kb on - strand, within wzzE at 4625.307 kb on - strand, within wzzE at 4625.307 kb on - strand, within wzzE at 4625.324 kb on - strand at 4625.353 kb on - strand at 4625.353 kb on - strand at 4625.421 kb on + strand at 4625.422 kb on - strand at 4625.422 kb on - strand at 4625.429 kb on - strand at 4625.429 kb on - strand at 4625.477 kb on + strand at 4625.504 kb on - strand at 4625.556 kb on - strand at 4625.758 kb on + strand, within wecA at 4625.784 kb on + strand, within wecA at 4625.829 kb on + strand, within wecA at 4625.832 kb on + strand, within wecA at 4625.832 kb on + strand, within wecA at 4625.833 kb on - strand, within wecA at 4625.896 kb on - strand, within wecA at 4625.917 kb on + strand, within wecA at 4625.917 kb on + strand, within wecA at 4625.918 kb on - strand, within wecA at 4625.918 kb on - strand, within wecA at 4625.950 kb on + strand, within wecA at 4625.960 kb on + strand, within wecA at 4625.960 kb on + strand, within wecA at 4625.961 kb on - strand, within wecA at 4626.091 kb on + strand, within wecA at 4626.091 kb on + strand, within wecA at 4626.091 kb on + strand, within wecA at 4626.091 kb on + strand, within wecA at 4626.099 kb on + strand, within wecA at 4626.100 kb on - strand, within wecA at 4626.100 kb on - strand, within wecA at 4626.139 kb on + strand, within wecA at 4626.139 kb on + strand, within wecA at 4626.139 kb on + strand, within wecA at 4626.183 kb on + strand, within wecA at 4626.183 kb on + strand, within wecA at 4626.184 kb on - strand, within wecA at 4626.184 kb on - strand, within wecA at 4626.184 kb on - strand, within wecA at 4626.204 kb on - strand, within wecA at 4626.348 kb on + strand, within wecA at 4626.348 kb on + strand, within wecA at 4626.349 kb on - strand, within wecA at 4626.349 kb on - strand, within wecA at 4626.349 kb on - strand, within wecA at 4626.350 kb on + strand, within wecA at 4626.350 kb on + strand, within wecA at 4626.350 kb on + strand, within wecA at 4626.351 kb on - strand, within wecA at 4626.351 kb on - strand, within wecA at 4626.351 kb on - strand, within wecA at 4626.354 kb on - strand, within wecA at 4626.354 kb on - strand, within wecA at 4626.357 kb on + strand, within wecA at 4626.358 kb on - strand, within wecA at 4626.361 kb on - strand, within wecA at 4626.441 kb on - strand, within wecA at 4626.451 kb on - strand at 4626.466 kb on - strand at 4626.541 kb on - strand at 4626.541 kb on - strand at 4626.559 kb on - strand at 4626.573 kb on + strand at 4626.601 kb on + strand at 4626.675 kb on - strand at 4626.715 kb on + strand at 4626.717 kb on + strand at 4626.718 kb on - strand at 4626.768 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 4,624,595 + wzzE LU632_RS24245 0.20 -2.1 4,624,688 - wzzE LU632_RS24245 0.29 +0.0 4,624,705 - wzzE LU632_RS24245 0.30 +0.6 4,624,781 + wzzE LU632_RS24245 0.38 -0.4 4,624,782 - wzzE LU632_RS24245 0.38 -0.4 4,624,907 + wzzE LU632_RS24245 0.50 -1.6 4,625,002 + wzzE LU632_RS24245 0.59 -0.3 4,625,003 - wzzE LU632_RS24245 0.59 +1.2 4,625,027 - wzzE LU632_RS24245 0.62 -0.1 4,625,027 - wzzE LU632_RS24245 0.62 -1.4 4,625,032 - wzzE LU632_RS24245 0.62 -0.5 4,625,032 - wzzE LU632_RS24245 0.62 -0.8 4,625,032 - wzzE LU632_RS24245 0.62 -1.4 4,625,070 - wzzE LU632_RS24245 0.66 -1.8 4,625,073 - wzzE LU632_RS24245 0.66 -0.6 4,625,172 + wzzE LU632_RS24245 0.76 -1.9 4,625,172 + wzzE LU632_RS24245 0.76 +0.6 4,625,173 - wzzE LU632_RS24245 0.76 +2.8 4,625,173 - wzzE LU632_RS24245 0.76 +1.9 4,625,173 - wzzE LU632_RS24245 0.76 -1.8 4,625,173 - wzzE LU632_RS24245 0.76 +0.3 4,625,181 + wzzE LU632_RS24245 0.77 -0.4 4,625,200 - wzzE LU632_RS24245 0.78 -0.1 4,625,222 + wzzE LU632_RS24245 0.81 -2.6 4,625,238 + wzzE LU632_RS24245 0.82 -1.1 4,625,239 - wzzE LU632_RS24245 0.82 -1.0 4,625,307 - wzzE LU632_RS24245 0.89 +0.9 4,625,307 - wzzE LU632_RS24245 0.89 +0.0 4,625,324 - +1.2 4,625,353 - -1.4 4,625,353 - -0.5 4,625,421 + -1.0 4,625,422 - -0.8 4,625,422 - +0.9 4,625,429 - +0.9 4,625,429 - -0.4 4,625,477 + -2.1 4,625,504 - +0.1 4,625,556 - -3.9 4,625,758 + wecA LU632_RS24250 0.26 -2.9 4,625,784 + wecA LU632_RS24250 0.29 +1.2 4,625,829 + wecA LU632_RS24250 0.33 -1.4 4,625,832 + wecA LU632_RS24250 0.33 -0.7 4,625,832 + wecA LU632_RS24250 0.33 -2.3 4,625,833 - wecA LU632_RS24250 0.33 -1.9 4,625,896 - wecA LU632_RS24250 0.39 +2.2 4,625,917 + wecA LU632_RS24250 0.41 -3.4 4,625,917 + wecA LU632_RS24250 0.41 -2.1 4,625,918 - wecA LU632_RS24250 0.41 -3.0 4,625,918 - wecA LU632_RS24250 0.41 -2.4 4,625,950 + wecA LU632_RS24250 0.44 -2.5 4,625,960 + wecA LU632_RS24250 0.45 -4.6 4,625,960 + wecA LU632_RS24250 0.45 -1.3 4,625,961 - wecA LU632_RS24250 0.45 +0.2 4,626,091 + wecA LU632_RS24250 0.57 -3.7 4,626,091 + wecA LU632_RS24250 0.57 +0.2 4,626,091 + wecA LU632_RS24250 0.57 -2.4 4,626,091 + wecA LU632_RS24250 0.57 -1.9 4,626,099 + wecA LU632_RS24250 0.58 -1.4 4,626,100 - wecA LU632_RS24250 0.58 -1.4 4,626,100 - wecA LU632_RS24250 0.58 -2.5 4,626,139 + wecA LU632_RS24250 0.61 -1.1 4,626,139 + wecA LU632_RS24250 0.61 -1.8 4,626,139 + wecA LU632_RS24250 0.61 -1.7 4,626,183 + wecA LU632_RS24250 0.65 -3.5 4,626,183 + wecA LU632_RS24250 0.65 -2.4 4,626,184 - wecA LU632_RS24250 0.66 -2.8 4,626,184 - wecA LU632_RS24250 0.66 -2.7 4,626,184 - wecA LU632_RS24250 0.66 -4.1 4,626,204 - wecA LU632_RS24250 0.67 -1.7 4,626,348 + wecA LU632_RS24250 0.81 -1.6 4,626,348 + wecA LU632_RS24250 0.81 -0.0 4,626,349 - wecA LU632_RS24250 0.81 -2.4 4,626,349 - wecA LU632_RS24250 0.81 -1.4 4,626,349 - wecA LU632_RS24250 0.81 +1.2 4,626,350 + wecA LU632_RS24250 0.81 -2.4 4,626,350 + wecA LU632_RS24250 0.81 -0.1 4,626,350 + wecA LU632_RS24250 0.81 -2.7 4,626,351 - wecA LU632_RS24250 0.81 -1.8 4,626,351 - wecA LU632_RS24250 0.81 -0.8 4,626,351 - wecA LU632_RS24250 0.81 -2.4 4,626,354 - wecA LU632_RS24250 0.81 -0.9 4,626,354 - wecA LU632_RS24250 0.81 -2.4 4,626,357 + wecA LU632_RS24250 0.82 -3.5 4,626,358 - wecA LU632_RS24250 0.82 -1.8 4,626,361 - wecA LU632_RS24250 0.82 -4.7 4,626,441 - wecA LU632_RS24250 0.89 -2.4 4,626,451 - -2.2 4,626,466 - -0.8 4,626,541 - +2.5 4,626,541 - -2.5 4,626,559 - -1.9 4,626,573 + -1.0 4,626,601 + +4.0 4,626,675 - +0.4 4,626,715 + -0.8 4,626,717 + -0.6 4,626,718 - -0.2 4,626,768 - -1.1
Or see this region's nucleotide sequence