Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24215

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
4,616,847	+	wzyE	LU632_RS24210	0.29	-1.1
4,616,847	+	wzyE	LU632_RS24210	0.29	+0.2
4,616,910	+	wzyE	LU632_RS24210	0.34	+0.5
4,617,145	+	wzyE	LU632_RS24210	0.51	-0.8
4,617,145	+	wzyE	LU632_RS24210	0.51	+0.2
4,617,154	+	wzyE	LU632_RS24210	0.52	-1.5
4,617,184	+	wzyE	LU632_RS24210	0.54	+0.7
4,617,184	+	wzyE	LU632_RS24210	0.54	-1.8
4,617,184	+	wzyE	LU632_RS24210	0.54	-1.2
4,617,369	+	wzyE	LU632_RS24210	0.68	-1.2
4,617,369	+	wzyE	LU632_RS24210	0.68	-1.1
4,617,424	+	wzyE	LU632_RS24210	0.72	+0.3
4,617,424	+	wzyE	LU632_RS24210	0.72	+0.5
4,617,457	+	wzyE	LU632_RS24210	0.75	+1.2
4,617,457	+	wzyE	LU632_RS24210	0.75	-0.8
4,617,544	-	wzyE	LU632_RS24210	0.81	+0.2
4,617,544	-	wzyE	LU632_RS24210	0.81	-0.8
4,617,546	+	wzyE	LU632_RS24210	0.81	-0.8
4,617,547	-	wzyE	LU632_RS24210	0.81	+1.2
4,617,617	-	wzyE	LU632_RS24210	0.86	-1.4
4,617,658	-	wzyE	LU632_RS24210	0.89	-0.6
4,617,794	+				-1.7
4,617,795	-				-1.3
4,617,795	-				+0.4
4,617,947	-		LU632_RS24215	0.14	-0.5
4,618,103	-		LU632_RS24215	0.29	-3.1
4,618,103	-		LU632_RS24215	0.29	-0.6
4,618,160	-		LU632_RS24215	0.34	+0.3
4,618,191	+		LU632_RS24215	0.37	-2.8
4,618,191	+		LU632_RS24215	0.37	-1.0
4,618,193	+		LU632_RS24215	0.37	-2.6
4,618,193	+		LU632_RS24215	0.37	-2.1
4,618,193	+		LU632_RS24215	0.37	-1.7
4,618,194	-		LU632_RS24215	0.37	+0.2
4,618,194	-		LU632_RS24215	0.37	-1.2
4,618,282	-		LU632_RS24215	0.46	-2.0
4,618,369	-		LU632_RS24215	0.54	-4.5
4,618,387	+		LU632_RS24215	0.55	+1.7
4,618,487	-		LU632_RS24215	0.65	-1.6
4,618,491	-		LU632_RS24215	0.65	-1.1
4,618,608	+		LU632_RS24215	0.76	-1.9
4,618,818	+				-2.2
4,618,864	-				+0.4
4,618,864	-				+0.4
4,618,918	+				-1.8
4,618,918	+				-1.4
4,618,918	+				-0.6
4,618,918	+				-2.2
4,618,918	+				-0.2
4,618,919	+				+0.2
4,618,919	-				-0.5
4,618,930	+				-1.3
4,618,930	+				-0.9
4,618,931	-				-0.8
4,618,931	-				-0.2
4,618,931	-				+2.2
4,619,024	-	wzxE	LU632_RS24220	0.13	-0.2
4,619,024	-	wzxE	LU632_RS24220	0.13	-1.3
4,619,068	+	wzxE	LU632_RS24220	0.17	-0.4
4,619,077	-	wzxE	LU632_RS24220	0.17	+1.2
4,619,307	-	wzxE	LU632_RS24220	0.36	+0.2
4,619,309	+	wzxE	LU632_RS24220	0.36	-2.9
4,619,310	-	wzxE	LU632_RS24220	0.36	-0.4
4,619,334	-	wzxE	LU632_RS24220	0.38	-0.6
4,619,433	-	wzxE	LU632_RS24220	0.46	+1.2
4,619,534	+	wzxE	LU632_RS24220	0.54	-1.4
4,619,695	-	wzxE	LU632_RS24220	0.67	-2.5
4,619,695	-	wzxE	LU632_RS24220	0.67	-0.0
4,619,750	+	wzxE	LU632_RS24220	0.71	-3.1
4,619,750	+	wzxE	LU632_RS24220	0.71	+0.2
4,619,792	+	wzxE	LU632_RS24220	0.75	-0.8
4,619,853	+	wzxE	LU632_RS24220	0.79	-1.5
4,619,853	+	wzxE	LU632_RS24220	0.79	-2.5