Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24180 and LU632_RS24185 are separated by 67 nucleotides LU632_RS24185 and LU632_RS24190 are separated by 30 nucleotides LU632_RS24190 and LU632_RS24195 are separated by 15 nucleotides LU632_RS24195 and LU632_RS24200 are separated by 64 nucleotides LU632_RS24200 and rffM are separated by 179 nucleotides rffM and wzyE are separated by 30 nucleotides
LU632_RS24180: LU632_RS24180 - tRNA-Pro, at 4,614,930 to 4,615,006
_RS24180
LU632_RS24185: LU632_RS24185 - tRNA-Pro, at 4,615,074 to 4,615,150
_RS24185
LU632_RS24190: LU632_RS24190 - tRNA-Leu, at 4,615,181 to 4,615,267
_RS24190
LU632_RS24195: LU632_RS24195 - tRNA-His, at 4,615,283 to 4,615,358
_RS24195
LU632_RS24200: LU632_RS24200 - tRNA-Arg, at 4,615,423 to 4,615,499
_RS24200
LU632_RS24205: rffM - lipopolysaccharide N-acetylmannosaminouronosyltransferase, at 4,615,679 to 4,616,419
rffM
LU632_RS24210: wzyE - ECA oligosaccharide polymerase, at 4,616,450 to 4,617,799
wzyE
Position (kb) 4615
4616
4617 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4614.697 kb on + strand at 4614.706 kb on - strand at 4614.716 kb on + strand at 4614.716 kb on + strand at 4615.037 kb on + strand at 4615.701 kb on + strand at 4615.711 kb on - strand at 4615.765 kb on - strand, within rffM at 4615.796 kb on + strand, within rffM at 4615.811 kb on + strand, within rffM at 4615.833 kb on + strand, within rffM at 4615.854 kb on + strand, within rffM at 4615.854 kb on + strand, within rffM at 4615.854 kb on + strand, within rffM at 4615.854 kb on + strand, within rffM at 4615.855 kb on - strand, within rffM at 4615.855 kb on - strand, within rffM at 4615.855 kb on - strand, within rffM at 4615.855 kb on - strand, within rffM at 4615.874 kb on + strand, within rffM at 4615.875 kb on - strand, within rffM at 4615.875 kb on - strand, within rffM at 4615.875 kb on - strand, within rffM at 4616.015 kb on - strand, within rffM at 4616.215 kb on - strand, within rffM at 4616.218 kb on + strand, within rffM at 4616.218 kb on + strand, within rffM at 4616.218 kb on + strand, within rffM at 4616.219 kb on - strand, within rffM at 4616.220 kb on + strand, within rffM at 4616.287 kb on + strand, within rffM at 4616.335 kb on - strand, within rffM at 4616.375 kb on - strand at 4616.434 kb on - strand at 4616.615 kb on + strand, within wzyE at 4616.615 kb on + strand, within wzyE at 4616.615 kb on + strand, within wzyE at 4616.618 kb on + strand, within wzyE at 4616.626 kb on + strand, within wzyE at 4616.722 kb on + strand, within wzyE at 4616.847 kb on + strand, within wzyE at 4616.847 kb on + strand, within wzyE at 4616.910 kb on + strand, within wzyE at 4617.145 kb on + strand, within wzyE at 4617.145 kb on + strand, within wzyE at 4617.154 kb on + strand, within wzyE at 4617.184 kb on + strand, within wzyE at 4617.184 kb on + strand, within wzyE at 4617.184 kb on + strand, within wzyE at 4617.369 kb on + strand, within wzyE at 4617.369 kb on + strand, within wzyE
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 4,614,697 + +0.1 4,614,706 - +0.5 4,614,716 + -1.7 4,614,716 + +0.8 4,615,037 + -1.3 4,615,701 + -0.9 4,615,711 - -1.9 4,615,765 - rffM LU632_RS24205 0.12 -2.2 4,615,796 + rffM LU632_RS24205 0.16 -2.7 4,615,811 + rffM LU632_RS24205 0.18 -2.2 4,615,833 + rffM LU632_RS24205 0.21 -3.6 4,615,854 + rffM LU632_RS24205 0.24 -1.3 4,615,854 + rffM LU632_RS24205 0.24 -0.3 4,615,854 + rffM LU632_RS24205 0.24 -2.7 4,615,854 + rffM LU632_RS24205 0.24 -1.3 4,615,855 - rffM LU632_RS24205 0.24 -2.1 4,615,855 - rffM LU632_RS24205 0.24 -2.6 4,615,855 - rffM LU632_RS24205 0.24 -2.5 4,615,855 - rffM LU632_RS24205 0.24 -0.7 4,615,874 + rffM LU632_RS24205 0.26 -2.2 4,615,875 - rffM LU632_RS24205 0.26 -2.8 4,615,875 - rffM LU632_RS24205 0.26 -0.9 4,615,875 - rffM LU632_RS24205 0.26 -3.5 4,616,015 - rffM LU632_RS24205 0.45 -2.3 4,616,215 - rffM LU632_RS24205 0.72 -1.6 4,616,218 + rffM LU632_RS24205 0.73 -2.3 4,616,218 + rffM LU632_RS24205 0.73 -2.1 4,616,218 + rffM LU632_RS24205 0.73 -0.8 4,616,219 - rffM LU632_RS24205 0.73 -0.3 4,616,220 + rffM LU632_RS24205 0.73 -3.0 4,616,287 + rffM LU632_RS24205 0.82 -3.1 4,616,335 - rffM LU632_RS24205 0.89 -2.6 4,616,375 - -3.7 4,616,434 - -0.7 4,616,615 + wzyE LU632_RS24210 0.12 -3.0 4,616,615 + wzyE LU632_RS24210 0.12 -1.6 4,616,615 + wzyE LU632_RS24210 0.12 -1.6 4,616,618 + wzyE LU632_RS24210 0.12 -0.1 4,616,626 + wzyE LU632_RS24210 0.13 -0.1 4,616,722 + wzyE LU632_RS24210 0.20 -1.2 4,616,847 + wzyE LU632_RS24210 0.29 -1.1 4,616,847 + wzyE LU632_RS24210 0.29 +0.2 4,616,910 + wzyE LU632_RS24210 0.34 +0.5 4,617,145 + wzyE LU632_RS24210 0.51 -0.8 4,617,145 + wzyE LU632_RS24210 0.51 +0.2 4,617,154 + wzyE LU632_RS24210 0.52 -1.5 4,617,184 + wzyE LU632_RS24210 0.54 +0.7 4,617,184 + wzyE LU632_RS24210 0.54 -1.8 4,617,184 + wzyE LU632_RS24210 0.54 -1.2 4,617,369 + wzyE LU632_RS24210 0.68 -1.2 4,617,369 + wzyE LU632_RS24210 0.68 -1.1
Or see this region's nucleotide sequence