Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23795

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
4,538,816	+				+2.2
4,538,816	+				-2.7
4,538,817	-				+0.9
4,538,817	-				-0.4
4,538,817	-				-1.1
4,538,819	-				+0.2
4,538,819	-				+0.1
4,538,873	-				-0.3
4,538,918	-		LU632_RS23785	0.29	+1.2
4,538,993	-		LU632_RS23785	0.67	+1.1
4,539,036	+		LU632_RS23785	0.88	-0.4
4,539,059	-				-1.9
4,539,059	-				-1.0
4,539,059	-				-0.7
4,539,122	+				-2.3
4,539,123	-				-0.8
4,539,187	+				-0.1
4,539,232	-		LU632_RS23790	0.15	+0.6
4,539,232	-		LU632_RS23790	0.15	-0.9
4,539,232	-		LU632_RS23790	0.15	+1.0
4,539,235	+		LU632_RS23790	0.15	+0.1
4,539,235	+		LU632_RS23790	0.15	-1.1
4,539,236	-		LU632_RS23790	0.16	+0.2
4,539,236	-		LU632_RS23790	0.16	-0.8
4,539,236	-		LU632_RS23790	0.16	+1.1
4,539,263	-		LU632_RS23790	0.20	+0.3
4,539,280	+		LU632_RS23790	0.22	+1.7
4,539,294	-		LU632_RS23790	0.24	+0.1
4,539,294	-		LU632_RS23790	0.24	+1.8
4,539,296	+		LU632_RS23790	0.25	-1.6
4,539,324	+		LU632_RS23790	0.29	+0.2
4,539,397	-		LU632_RS23790	0.40	+5.7
4,539,400	+		LU632_RS23790	0.41	+1.2
4,539,472	+		LU632_RS23790	0.52	-0.8
4,539,473	-		LU632_RS23790	0.52	-2.1
4,539,594	+		LU632_RS23790	0.70	+1.2
4,539,776	-				-0.4
4,539,777	+				+2.2
4,539,778	-				+1.5
4,539,819	+				+0.7
4,539,825	+				-0.1
4,539,825	+				+0.0
4,539,951	-		LU632_RS23795	0.14	+1.2
4,539,951	-		LU632_RS23795	0.14	-0.6
4,539,994	-		LU632_RS23795	0.18	-1.1
4,540,041	+		LU632_RS23795	0.22	+0.4
4,540,041	+		LU632_RS23795	0.22	-1.6
4,540,041	+		LU632_RS23795	0.22	+1.6
4,540,041	+		LU632_RS23795	0.22	-2.1
4,540,042	-		LU632_RS23795	0.22	+0.1
4,540,042	-		LU632_RS23795	0.22	-1.1
4,540,042	-		LU632_RS23795	0.22	-2.2
4,540,042	-		LU632_RS23795	0.22	+3.8
4,540,114	-		LU632_RS23795	0.28	-1.0
4,540,267	-		LU632_RS23795	0.41	+1.2
4,540,510	-		LU632_RS23795	0.61	+0.6
4,540,760	+		LU632_RS23795	0.82	+0.8
4,540,761	-		LU632_RS23795	0.82	+1.2
4,540,761	-		LU632_RS23795	0.82	+0.4
4,540,847	+		LU632_RS23795	0.89	+0.9
4,540,847	+		LU632_RS23795	0.89	+0.7
4,540,848	-		LU632_RS23795	0.89	-1.4
4,540,848	-		LU632_RS23795	0.89	+0.4
4,540,898	-				+1.1
4,540,907	+				+0.2
4,540,922	-				+1.2
4,540,922	-				+0.2
4,540,985	+				+1.1
4,540,985	+				-0.6
4,541,122	+		LU632_RS23800	0.42	+1.8
4,541,122	+		LU632_RS23800	0.42	-0.5
4,541,122	+		LU632_RS23800	0.42	+0.6
4,541,123	-		LU632_RS23800	0.42	+1.2
4,541,125	+		LU632_RS23800	0.43	+0.7
4,541,126	-		LU632_RS23800	0.43	-1.3
4,541,135	+		LU632_RS23800	0.45	+0.9
4,541,135	+		LU632_RS23800	0.45	+0.5
4,541,136	-		LU632_RS23800	0.46	+0.5
4,541,136	-		LU632_RS23800	0.46	+1.2
4,541,136	-		LU632_RS23800	0.46	-0.1
4,541,137	+		LU632_RS23800	0.46	+1.2
4,541,495	-		LU632_RS23805	0.23	+0.2
4,541,578	+		LU632_RS23805	0.34	+1.0
4,541,627	+		LU632_RS23805	0.40	-0.8
4,541,628	-		LU632_RS23805	0.41	+0.1
4,541,628	-		LU632_RS23805	0.41	-0.5
4,541,628	-		LU632_RS23805	0.41	+0.6
4,541,628	-		LU632_RS23805	0.41	-0.3
4,541,705	+		LU632_RS23805	0.51	+0.6
4,541,767	+		LU632_RS23805	0.59	+0.8