Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23615 and LU632_RS23620 overlap by 4 nucleotides LU632_RS23620 and LU632_RS23625 are separated by 507 nucleotides LU632_RS23625 and LU632_RS23630 are separated by 23 nucleotides LU632_RS23630 and LU632_RS23635 are separated by 532 nucleotides
LU632_RS23615: LU632_RS23615 - type II toxin-antitoxin system VapB family antitoxin, at 4,506,358 to 4,506,564
_RS23615
LU632_RS23620: LU632_RS23620 - VapC toxin family PIN domain ribonuclease, at 4,506,561 to 4,506,947
_RS23620
LU632_RS23625: LU632_RS23625 - IS91 family transposase, at 4,507,455 to 4,508,607
_RS23625
LU632_RS23630: LU632_RS23630 - hypothetical protein, at 4,508,631 to 4,508,804
_RS23630
LU632_RS23635: LU632_RS23635 - pyridoxal-phosphate dependent enzyme, at 4,509,337 to 4,510,008
_RS23635
Position (kb) 4507
4508
4509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4506.567 kb on - strand at 4506.578 kb on + strand at 4506.579 kb on - strand at 4506.679 kb on + strand, within LU632_RS23620 at 4506.759 kb on - strand, within LU632_RS23620 at 4506.759 kb on - strand, within LU632_RS23620 at 4506.825 kb on - strand, within LU632_RS23620 at 4506.827 kb on + strand, within LU632_RS23620 at 4506.828 kb on - strand, within LU632_RS23620 at 4506.998 kb on + strand at 4507.102 kb on + strand at 4507.122 kb on + strand at 4507.126 kb on + strand at 4507.127 kb on - strand at 4507.161 kb on + strand at 4507.167 kb on + strand at 4507.241 kb on - strand at 4507.241 kb on - strand at 4507.306 kb on + strand at 4507.306 kb on + strand at 4508.153 kb on + strand, within LU632_RS23625 at 4508.157 kb on + strand, within LU632_RS23625 at 4508.157 kb on + strand, within LU632_RS23625 at 4508.157 kb on + strand, within LU632_RS23625 at 4509.079 kb on - strand at 4509.228 kb on + strand at 4509.229 kb on - strand at 4509.231 kb on + strand at 4509.231 kb on + strand at 4509.232 kb on - strand at 4509.237 kb on + strand at 4509.238 kb on - strand at 4509.274 kb on + strand at 4509.274 kb on + strand at 4509.275 kb on - strand at 4509.275 kb on - strand at 4509.300 kb on - strand at 4509.300 kb on - strand at 4509.337 kb on - strand at 4509.351 kb on + strand at 4509.351 kb on + strand at 4509.352 kb on - strand at 4509.352 kb on - strand at 4509.352 kb on - strand at 4509.386 kb on - strand at 4509.463 kb on - strand, within LU632_RS23635 at 4509.494 kb on + strand, within LU632_RS23635 at 4509.494 kb on + strand, within LU632_RS23635 at 4509.495 kb on - strand, within LU632_RS23635 at 4509.511 kb on - strand, within LU632_RS23635 at 4509.538 kb on + strand, within LU632_RS23635 at 4509.539 kb on - strand, within LU632_RS23635 at 4509.539 kb on - strand, within LU632_RS23635 at 4509.578 kb on - strand, within LU632_RS23635
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 4,506,567 - -0.6 4,506,578 + +0.4 4,506,579 - +1.0 4,506,679 + LU632_RS23620 0.30 -1.6 4,506,759 - LU632_RS23620 0.51 -0.8 4,506,759 - LU632_RS23620 0.51 +1.6 4,506,825 - LU632_RS23620 0.68 +0.2 4,506,827 + LU632_RS23620 0.69 +0.6 4,506,828 - LU632_RS23620 0.69 +1.2 4,506,998 + -3.5 4,507,102 + +0.1 4,507,122 + +1.9 4,507,126 + -2.0 4,507,127 - +1.8 4,507,161 + -0.4 4,507,167 + -0.5 4,507,241 - -0.7 4,507,241 - -0.4 4,507,306 + -0.4 4,507,306 + -2.1 4,508,153 + LU632_RS23625 0.61 -1.5 4,508,157 + LU632_RS23625 0.61 +1.2 4,508,157 + LU632_RS23625 0.61 +1.7 4,508,157 + LU632_RS23625 0.61 +1.0 4,509,079 - -0.6 4,509,228 + +0.5 4,509,229 - -0.0 4,509,231 + -1.5 4,509,231 + +3.0 4,509,232 - +1.2 4,509,237 + -1.4 4,509,238 - -1.4 4,509,274 + -1.6 4,509,274 + +1.5 4,509,275 - +0.8 4,509,275 - -1.9 4,509,300 - -0.5 4,509,300 - +0.7 4,509,337 - +0.0 4,509,351 + +1.6 4,509,351 + +0.7 4,509,352 - +1.5 4,509,352 - +2.2 4,509,352 - -0.4 4,509,386 - -0.7 4,509,463 - LU632_RS23635 0.19 +1.5 4,509,494 + LU632_RS23635 0.23 -0.5 4,509,494 + LU632_RS23635 0.23 +0.3 4,509,495 - LU632_RS23635 0.24 -0.1 4,509,511 - LU632_RS23635 0.26 +1.2 4,509,538 + LU632_RS23635 0.30 +1.1 4,509,539 - LU632_RS23635 0.30 -0.1 4,509,539 - LU632_RS23635 0.30 +1.5 4,509,578 - LU632_RS23635 0.36 +0.9
Or see this region's nucleotide sequence