Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23505

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS23495 and LU632_RS23500 overlap by 4 nucleotidesLU632_RS23500 and LU632_RS23505 are separated by 125 nucleotidesLU632_RS23505 and LU632_RS23510 are separated by 22 nucleotidesLU632_RS23510 and LU632_RS23515 are separated by 282 nucleotides LU632_RS23495: LU632_RS23495 - hypothetical protein, at 4,482,193 to 4,482,894 _RS23495 LU632_RS23500: LU632_RS23500 - hypothetical protein, at 4,482,891 to 4,483,322 _RS23500 LU632_RS23505: LU632_RS23505 - IS256 family transposase, at 4,483,448 to 4,484,645 _RS23505 LU632_RS23510: LU632_RS23510 - hypothetical protein, at 4,484,668 to 4,484,958 _RS23510 LU632_RS23515: LU632_RS23515 - transposase, at 4,485,241 to 4,485,798 _RS23515 Position (kb) 4483 4484 4485Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4482.537 kb on + strand, within LU632_RS23495at 4482.606 kb on - strand, within LU632_RS23495at 4482.662 kb on + strand, within LU632_RS23495at 4482.663 kb on - strand, within LU632_RS23495at 4482.686 kb on + strand, within LU632_RS23495at 4482.687 kb on - strand, within LU632_RS23495at 4482.763 kb on - strand, within LU632_RS23495at 4482.784 kb on - strand, within LU632_RS23495at 4482.794 kb on + strand, within LU632_RS23495at 4482.804 kb on + strand, within LU632_RS23495at 4482.863 kb on + strandat 4482.902 kb on + strandat 4482.909 kb on - strandat 4482.955 kb on + strand, within LU632_RS23500at 4482.967 kb on + strand, within LU632_RS23500at 4482.967 kb on + strand, within LU632_RS23500at 4482.967 kb on + strand, within LU632_RS23500at 4482.968 kb on - strand, within LU632_RS23500at 4482.968 kb on - strand, within LU632_RS23500at 4483.030 kb on - strand, within LU632_RS23500at 4483.043 kb on - strand, within LU632_RS23500at 4483.074 kb on + strand, within LU632_RS23500at 4483.185 kb on + strand, within LU632_RS23500at 4483.272 kb on - strand, within LU632_RS23500at 4483.328 kb on + strandat 4483.328 kb on + strandat 4483.329 kb on - strandat 4483.388 kb on - strandat 4483.777 kb on + strand, within LU632_RS23505at 4483.826 kb on - strand, within LU632_RS23505at 4484.657 kb on + strandat 4484.739 kb on + strand, within LU632_RS23510at 4484.739 kb on + strand, within LU632_RS23510at 4484.740 kb on - strand, within LU632_RS23510at 4484.740 kb on - strand, within LU632_RS23510at 4484.740 kb on - strand, within LU632_RS23510at 4484.740 kb on - strand, within LU632_RS23510at 4484.745 kb on + strand, within LU632_RS23510at 4484.745 kb on + strand, within LU632_RS23510at 4484.745 kb on + strand, within LU632_RS23510at 4484.745 kb on + strand, within LU632_RS23510at 4484.745 kb on + strand, within LU632_RS23510at 4484.745 kb on + strand, within LU632_RS23510at 4484.746 kb on - strand, within LU632_RS23510at 4484.746 kb on - strand, within LU632_RS23510at 4484.748 kb on + strand, within LU632_RS23510at 4484.751 kb on + strand, within LU632_RS23510at 4484.751 kb on + strand, within LU632_RS23510at 4484.751 kb on + strand, within LU632_RS23510at 4484.751 kb on + strand, within LU632_RS23510at 4484.802 kb on + strand, within LU632_RS23510at 4484.802 kb on + strand, within LU632_RS23510at 4484.802 kb on + strand, within LU632_RS23510at 4484.802 kb on + strand, within LU632_RS23510at 4484.802 kb on + strand, within LU632_RS23510at 4484.803 kb on - strand, within LU632_RS23510at 4484.803 kb on - strand, within LU632_RS23510at 4484.803 kb on - strand, within LU632_RS23510at 4484.803 kb on - strand, within LU632_RS23510at 4484.803 kb on - strand, within LU632_RS23510at 4484.803 kb on - strand, within LU632_RS23510at 4484.822 kb on + strand, within LU632_RS23510at 4484.823 kb on - strand, within LU632_RS23510at 4484.849 kb on + strand, within LU632_RS23510at 4484.849 kb on + strand, within LU632_RS23510at 4484.875 kb on - strand, within LU632_RS23510at 4484.876 kb on + strand, within LU632_RS23510at 4484.970 kb on - strandat 4485.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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4,482,537 + LU632_RS23495 0.49 -0.5
4,482,606 - LU632_RS23495 0.59 -1.5
4,482,662 + LU632_RS23495 0.67 -1.4
4,482,663 - LU632_RS23495 0.67 -0.4
4,482,686 + LU632_RS23495 0.70 -0.5
4,482,687 - LU632_RS23495 0.70 +1.2
4,482,763 - LU632_RS23495 0.81 -1.7
4,482,784 - LU632_RS23495 0.84 +0.5
4,482,794 + LU632_RS23495 0.86 +0.6
4,482,804 + LU632_RS23495 0.87 +1.2
4,482,863 + -0.4
4,482,902 + +1.2
4,482,909 - -2.9
4,482,955 + LU632_RS23500 0.15 -0.7
4,482,967 + LU632_RS23500 0.18 +0.5
4,482,967 + LU632_RS23500 0.18 +1.0
4,482,967 + LU632_RS23500 0.18 +2.3
4,482,968 - LU632_RS23500 0.18 -2.6
4,482,968 - LU632_RS23500 0.18 -2.3
4,483,030 - LU632_RS23500 0.32 +1.5
4,483,043 - LU632_RS23500 0.35 -1.3
4,483,074 + LU632_RS23500 0.42 -1.0
4,483,185 + LU632_RS23500 0.68 +0.5
4,483,272 - LU632_RS23500 0.88 +1.5
4,483,328 + +0.4
4,483,328 + -0.4
4,483,329 - -0.2
4,483,388 - -0.9
4,483,777 + LU632_RS23505 0.27 +0.2
4,483,826 - LU632_RS23505 0.32 +1.4
4,484,657 + +3.2
4,484,739 + LU632_RS23510 0.24 -2.0
4,484,739 + LU632_RS23510 0.24 +0.1
4,484,740 - LU632_RS23510 0.25 -0.4
4,484,740 - LU632_RS23510 0.25 +1.6
4,484,740 - LU632_RS23510 0.25 -1.4
4,484,740 - LU632_RS23510 0.25 +0.1
4,484,745 + LU632_RS23510 0.26 +0.2
4,484,745 + LU632_RS23510 0.26 -0.8
4,484,745 + LU632_RS23510 0.26 -0.1
4,484,745 + LU632_RS23510 0.26 +2.0
4,484,745 + LU632_RS23510 0.26 +0.8
4,484,745 + LU632_RS23510 0.26 -2.4
4,484,746 - LU632_RS23510 0.27 -1.6
4,484,746 - LU632_RS23510 0.27 +0.7
4,484,748 + LU632_RS23510 0.27 +2.7
4,484,751 + LU632_RS23510 0.29 -0.7
4,484,751 + LU632_RS23510 0.29 +0.6
4,484,751 + LU632_RS23510 0.29 -0.6
4,484,751 + LU632_RS23510 0.29 +0.6
4,484,802 + LU632_RS23510 0.46 +0.6
4,484,802 + LU632_RS23510 0.46 +0.6
4,484,802 + LU632_RS23510 0.46 +0.2
4,484,802 + LU632_RS23510 0.46 +3.5
4,484,802 + LU632_RS23510 0.46 +0.2
4,484,803 - LU632_RS23510 0.46 -1.8
4,484,803 - LU632_RS23510 0.46 +1.6
4,484,803 - LU632_RS23510 0.46 -1.8
4,484,803 - LU632_RS23510 0.46 -2.4
4,484,803 - LU632_RS23510 0.46 -3.1
4,484,803 - LU632_RS23510 0.46 +4.3
4,484,822 + LU632_RS23510 0.53 -1.4
4,484,823 - LU632_RS23510 0.53 +1.8
4,484,849 + LU632_RS23510 0.62 +1.4
4,484,849 + LU632_RS23510 0.62 +1.7
4,484,875 - LU632_RS23510 0.71 -0.4
4,484,876 + LU632_RS23510 0.71 -0.8
4,484,970 - +3.4
4,485,240 - +1.1

Or see this region's nucleotide sequence