Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23170

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
4,414,802	+				-1.2
4,414,803	-				-0.2
4,414,832	-				-1.2
4,414,902	-				+0.1
4,414,902	-				+0.5
4,414,904	-				-1.2
4,414,904	-				+0.1
4,414,928	-				+0.4
4,415,004	+				-0.6
4,415,005	-				-3.0
4,415,005	-				-1.2
4,415,056	+				+0.9
4,415,113	-				+1.4
4,415,152	+				+2.2
4,415,247	-				+0.9
4,415,282	+				+2.9
4,415,284	+				+1.5
4,415,284	+				+1.8
4,415,285	-				+0.9
4,415,285	-				-1.4
4,415,507	-				-0.4
4,415,507	-				-0.4
4,415,967	+		LU632_RS23170	0.25	-0.1
4,416,075	+		LU632_RS23170	0.38	-0.3
4,416,098	-		LU632_RS23170	0.41	-0.2
4,416,161	-		LU632_RS23170	0.49	+0.6
4,416,235	-		LU632_RS23170	0.58	+1.6
4,416,348	+		LU632_RS23170	0.72	-0.8
4,416,410	-		LU632_RS23170	0.80	-0.5
4,416,468	+		LU632_RS23170	0.87	+1.8
4,416,478	-		LU632_RS23170	0.88	+0.9
4,416,528	+				+1.9
4,416,528	+				-1.2
4,416,552	+				-0.8
4,416,574	-				+1.4
4,416,617	+				-0.4
4,416,646	+				-2.3
4,416,646	+				-0.2
4,416,652	+				-0.2
4,416,707	-				-2.2
4,416,826	+				+1.0
4,416,854	+				+2.5
4,416,855	-				+0.2
4,416,879	+				-0.1
4,416,880	-				+0.6
4,416,941	+				-0.5
4,416,966	+				+1.1
4,416,998	-				+0.2
4,416,998	-				+0.9
4,417,034	-				-0.3
4,417,044	+				+0.6
4,417,046	+				-1.0
4,417,046	+				+2.4
4,417,046	+				+0.2
4,417,047	-				-2.1
4,417,047	-				-0.7
4,417,047	-				-0.6
4,417,111	+				+1.2
4,417,112	-				+0.8
4,417,139	-				-0.8
4,417,146	-				+0.2
4,417,164	-				-0.1
4,417,207	-				+0.5
4,417,303	+		LU632_RS23175	0.10	+5.1
4,417,303	+		LU632_RS23175	0.10	-0.3
4,417,303	+		LU632_RS23175	0.10	+1.2
4,417,303	+		LU632_RS23175	0.10	-1.8
4,417,303	+		LU632_RS23175	0.10	-0.8
4,417,304	-		LU632_RS23175	0.10	-1.2
4,417,304	-		LU632_RS23175	0.10	-0.7
4,417,304	-		LU632_RS23175	0.10	-0.9
4,417,304	-		LU632_RS23175	0.10	-1.2
4,417,304	-		LU632_RS23175	0.10	+3.4
4,417,392	-		LU632_RS23175	0.43	+2.2