Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22935

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
4,368,546	+	pckA	LU632_RS22930	0.81	-1.6
4,368,546	+	pckA	LU632_RS22930	0.81	+1.2
4,368,546	+	pckA	LU632_RS22930	0.81	-0.5
4,368,547	-	pckA	LU632_RS22930	0.81	-2.6
4,368,573	+	pckA	LU632_RS22930	0.83	-1.3
4,368,656	+	pckA	LU632_RS22930	0.88	-0.8
4,368,660	+	pckA	LU632_RS22930	0.88	-0.4
4,368,660	+	pckA	LU632_RS22930	0.88	-2.0
4,368,724	+				+1.1
4,368,724	+				+1.6
4,368,724	+				-0.3
4,368,725	-				+0.5
4,368,796	+				+0.0
4,368,797	-				-1.4
4,368,797	-				+0.2
4,368,797	-				-0.2
4,368,799	-				-2.4
4,368,860	+				+0.4
4,368,919	-				-0.8
4,368,938	-				-0.8
4,368,956	-				-2.0
4,368,968	+				-2.0
4,368,968	+				-0.1
4,368,968	+				-1.6
4,368,969	-				-0.1
4,368,971	-				+0.2
4,368,989	-				-1.0
4,369,009	+				-0.6
4,369,010	-				+1.8
4,369,046	+				-0.0
4,369,047	-				-0.3
4,369,113	-				+0.6
4,369,160	+				+0.6
4,369,208	+				-2.1
4,369,338	+				+0.8
4,369,450	+				-0.1
4,369,462	-				-0.7
4,369,467	+				+0.2
4,369,468	-				-1.2
4,369,520	-				+0.6
4,369,620	+				-1.4
4,369,621	-				+0.2
4,369,653	-				-2.4
4,369,811	+	envZ	LU632_RS22935	0.21	+0.2
4,369,835	-	envZ	LU632_RS22935	0.22	-0.8
4,369,856	+	envZ	LU632_RS22935	0.24	+0.2
4,369,874	+	envZ	LU632_RS22935	0.25	-1.8
4,369,943	-	envZ	LU632_RS22935	0.30	-0.2
4,370,004	+	envZ	LU632_RS22935	0.35	-0.4
4,370,004	+	envZ	LU632_RS22935	0.35	+1.2
4,370,005	-	envZ	LU632_RS22935	0.35	+0.2
4,370,005	-	envZ	LU632_RS22935	0.35	-0.8
4,370,005	-	envZ	LU632_RS22935	0.35	-5.1
4,370,005	-	envZ	LU632_RS22935	0.35	-3.7
4,370,026	+	envZ	LU632_RS22935	0.36	+1.2
4,370,027	-	envZ	LU632_RS22935	0.37	+0.2
4,370,076	-	envZ	LU632_RS22935	0.40	+1.2
4,370,248	-	envZ	LU632_RS22935	0.53	-1.6
4,370,248	-	envZ	LU632_RS22935	0.53	+1.2
4,370,285	+	envZ	LU632_RS22935	0.56	-4.1
4,370,286	-	envZ	LU632_RS22935	0.56	-1.6
4,370,294	+	envZ	LU632_RS22935	0.56	+1.2
4,370,396	+	envZ	LU632_RS22935	0.64	+0.2
4,370,396	+	envZ	LU632_RS22935	0.64	-3.5
4,370,396	+	envZ	LU632_RS22935	0.64	-1.0
4,370,396	+	envZ	LU632_RS22935	0.64	-2.7
4,370,397	-	envZ	LU632_RS22935	0.64	-3.5
4,370,397	-	envZ	LU632_RS22935	0.64	-1.1
4,370,397	-	envZ	LU632_RS22935	0.64	-3.5
4,370,397	-	envZ	LU632_RS22935	0.64	-2.9
4,370,573	-	envZ	LU632_RS22935	0.77	-0.4
4,370,714	+	envZ	LU632_RS22935	0.87	-0.4
4,370,714	+	envZ	LU632_RS22935	0.87	-2.5
4,370,715	-	envZ	LU632_RS22935	0.87	+1.2
4,370,715	-	envZ	LU632_RS22935	0.87	-0.8
4,370,721	-	envZ	LU632_RS22935	0.88	+1.2
4,370,744	+	envZ	LU632_RS22935	0.90	-1.1
4,370,794	+				-2.5
4,370,794	+				+1.2
4,370,795	-				-2.4
4,370,828	+				-0.4
4,370,828	+				-1.4
4,370,829	-				-3.3
4,370,829	-				-2.0
4,370,940	+				-2.1
4,370,941	-				+1.2
4,371,021	+	ompR	LU632_RS22940	0.19	-0.8
4,371,022	-	ompR	LU632_RS22940	0.19	-1.8
4,371,178	+	ompR	LU632_RS22940	0.41	-2.5
4,371,295	+	ompR	LU632_RS22940	0.57	-0.8
4,371,295	+	ompR	LU632_RS22940	0.57	-1.8
4,371,295	-	ompR	LU632_RS22940	0.57	-3.2
4,371,297	+	ompR	LU632_RS22940	0.58	-0.4
4,371,297	+	ompR	LU632_RS22940	0.58	-1.1
4,371,298	-	ompR	LU632_RS22940	0.58	-0.8
4,371,362	-	ompR	LU632_RS22940	0.67	-2.8
4,371,365	+	ompR	LU632_RS22940	0.67	-0.8
4,371,406	+	ompR	LU632_RS22940	0.73	-2.0
4,371,407	-	ompR	LU632_RS22940	0.73	+0.2
4,371,407	-	ompR	LU632_RS22940	0.73	-1.8
4,371,410	+	ompR	LU632_RS22940	0.73	-0.4
4,371,662	+				+0.2
4,371,662	+				-0.4
4,371,680	+				+0.2
4,371,682	+				-1.6
4,371,682	+				-1.3
4,371,682	+				+1.0
4,371,682	+				-0.7
4,371,683	-				-1.1
4,371,747	+		LU632_RS22945	0.34	-0.2
4,371,878	-				+3.0